View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_49 (Length: 347)
Name: NF10121_low_49
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 32688147 - 32687828
Alignment:
| Q |
15 |
gataaactatctttgcaggagcatcctagctctatttcat-catttttcaaagctccaagacagattcaacactcnnnnnnn-ctttgtttcaatttcta |
112 |
Q |
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| T |
32688147 |
gataaactgtctttgcaggagcatcctagctctatttcattcatttttcaaagctccaagacagattcaacactcttttttttctttgtttcaatttcta |
32688048 |
T |
|
| Q |
113 |
gaaggtaatatatannnnnnngtttggattatatgttgatagagtttgtttatttatattgataacaataacatgacttcactccttttctctttgcttt |
212 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688047 |
gaaggtaatacattttttgttgtttggattatatgttgatagagtttgtttatttatattgataacaataacatgacttcactccttttctctttgcttt |
32687948 |
T |
|
| Q |
213 |
tctcacgacgaaacaatggagaacatatgttattaaagtttccttttgcttttcccattgtaacgatttctaacgactaacgtgagaggagagaagacgt |
312 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||| || |
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| T |
32687947 |
tctcacgatgaaacaatgcagaacatatgttattaaagtttccttttgcttttcccattttagcaatttctaacgactaacgtgagaagagagaagatgt |
32687848 |
T |
|
| Q |
313 |
ctctgtgaggtagttgttat |
332 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
32687847 |
ctctatgaggtagttgttat |
32687828 |
T |
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