View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_5 (Length: 615)
Name: NF10121_low_5
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 276 - 601
Target Start/End: Original strand, 52624374 - 52624686
Alignment:
| Q |
276 |
caataatccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
375 |
Q |
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| T |
52624374 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
52624473 |
T |
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| Q |
376 |
aagaaggnnnnnnncacctgtttctaattctttaattatttatcatttttacacttgtatcattcattctgagtttatttcgtttgctgcattacatgtc |
475 |
Q |
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| T |
52624474 |
aagaaggaaaaaaacacctgtttctaattctttaattatttatcatttttacacttgta----tcattctgagtttatttcgtttgctgcattacatgtc |
52624569 |
T |
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| Q |
476 |
atccttagtaatgacattggaaggttcaaaatgaaatattcgctggcctgttgctaagattcgttgagggtcgaattgcatcttcatggcattgaattgg |
575 |
Q |
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| T |
52624570 |
atccttagtaatgac---------ttcaaaatgaaatattcgctggcctgttgctaagattcgttgagggtcgaattgcatcttcatggcattgaattgg |
52624660 |
T |
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| Q |
576 |
gtccatttatctccaaagtggtccat |
601 |
Q |
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| T |
52624661 |
gtccatttatctccaaagtggtccat |
52624686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 79 - 278
Target Start/End: Original strand, 52616572 - 52616760
Alignment:
| Q |
79 |
caatttataggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaacaaacagatgcttgtatgtggataagacaacaaa |
178 |
Q |
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| T |
52616572 |
caatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaaca----gctgcttgtatgtggataagacaacaaa |
52616667 |
T |
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| Q |
179 |
atcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgtgtattgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa |
278 |
Q |
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| T |
52616668 |
atcagacgggtggtcgggatcacgggcgctgcactgagacatgtca-------tgtcatctccccttccccccaaaaaggccccacgtctcttagatcaa |
52616760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 80 - 227
Target Start/End: Original strand, 52624144 - 52624291
Alignment:
| Q |
80 |
aatttataggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaacaaacagatgcttgtatgtggataagacaacaaaa |
179 |
Q |
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| T |
52624144 |
aatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactggaaacaaacagctgcttgtatgtggataagacaacaaaa |
52624243 |
T |
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| Q |
180 |
tcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgt |
227 |
Q |
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| T |
52624244 |
tcagacgggtggtcgggatcacgggcgctgcactgagacatgtcatgt |
52624291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 276 - 416
Target Start/End: Original strand, 52616808 - 52616948
Alignment:
| Q |
276 |
caataatccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
375 |
Q |
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| T |
52616808 |
caataacccaactccatttcaatcaataatcttcagatagcaacacctcaactaccctcttgcacaattagcacatgcaccacctatggaagtgaaaaag |
52616907 |
T |
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| Q |
376 |
aagaaggnnnnnnncacctgtttctaattctttaattattt |
416 |
Q |
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| T |
52616908 |
aagaaggaaaaaaacacctgtttctaattctttaattattt |
52616948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 52623972 - 52624043
Alignment:
| Q |
17 |
acatcagattttgtctagattgatcttaacactttgaaaaagaaatcgaagaaaaactcaaacaatttatag |
88 |
Q |
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| T |
52623972 |
acatcagattttgtctagattgatcttaacactttgaaaaagaaatcgaagaaaaactcaaacaatttatag |
52624043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 440
Target Start/End: Original strand, 52617006 - 52617038
Alignment:
| Q |
408 |
taattatttatcatttttacacttgtatcattc |
440 |
Q |
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| T |
52617006 |
taattatttatcatttttacacttgtatcattc |
52617038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 52624297 - 52624326
Alignment:
| Q |
249 |
cccaaaaaggccccacgtctcttagatcaa |
278 |
Q |
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| T |
52624297 |
cccaaaaaggccccacgtctcttagatcaa |
52624326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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