View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_50 (Length: 339)
Name: NF10121_low_50
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 47577604 - 47577286
Alignment:
| Q |
1 |
ataggacatgatgacataatgcatagagccataaaatacacccacaattttgttggcgattgggttagttgtatggtagtgtatattatcatatgctatc |
100 |
Q |
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| T |
47577604 |
ataggacatgatgacataatgcatagagccataaaatacacccacaattttgttggcgattgggttagttgtatggtagtgtatattatcatatgctatc |
47577505 |
T |
|
| Q |
101 |
ataacataaaaaa-catgtaacaaacgatgataacataaacattatcatcacatcatgatcatgtgcgtccttggatgttaataatatggcattgtaggt |
199 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
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| T |
47577504 |
ataacataaaaaaacatgtaacaaacgatgataacataaacattatcatcacatcatgatcatgtgcgtgcttggatgttaata---tggcattgtgggt |
47577408 |
T |
|
| Q |
200 |
cccggtcggcgctcaaatgggtcctccatatcacttcttcaccaaccccacgtatacacatgtttttattccattctatgatcatataattatggtttaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47577407 |
cccggtcggcgctcaaatgggtcctccatatcacttcttcaccaaccccacgtatacacatgtttttattccattctatgatcatataattatggtttaa |
47577308 |
T |
|
| Q |
300 |
ttgaaaaataaaatcatagtga |
321 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
47577307 |
ttgaaaaataaaatcatagtga |
47577286 |
T |
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