View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_51 (Length: 336)
Name: NF10121_low_51
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 32998724 - 32998502
Alignment:
| Q |
18 |
gaagactaggtggagaaaagaaattgaatggcttctttctgtgactgatcatattgttgaatttgctccatcacaacagttagctaaggatggatcaacc |
117 |
Q |
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| T |
32998724 |
gaagactaggtggagaaaagaaattgaatggcttctttctgtgactgatcatattgttgaatttgctccatcacaacagttagctaaggatggatcaacc |
32998625 |
T |
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| Q |
118 |
atggaggtaaacactcagcttgaaaattatttaattgatgtatatcgtggatccgactcccctacgattagggattatccgcattcacacaactgggaca |
217 |
Q |
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| T |
32998624 |
atggaggtaaacactcagcttgaaaattatttaattgatgtatatcgtggatccggctcccctgcaatcaggaattctccgcattcacacaattgggaca |
32998525 |
T |
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| Q |
218 |
atgtggccgttcaatcatgatcg |
240 |
Q |
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| T |
32998524 |
atgtgggcgttcaatcatgatcg |
32998502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 32998422 - 32998351
Alignment:
| Q |
234 |
atgatcgactactgatgtcccaactgcatgaatacggagaatccctaactgtatggaatccgaatatcatca |
305 |
Q |
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| T |
32998422 |
atgaacgactactgatgtcccaactgcatgaatgcggagaatccctaactgcgtgaaatccgaatatcatca |
32998351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 3548615 - 3548715
Alignment:
| Q |
28 |
tggagaaaagaaattgaatggcttctttctgtgactgatcatattgttgaatttgctccatcacaacagttagctaaggatggatcaaccatggaggtaa |
127 |
Q |
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| T |
3548615 |
tggagaaaagaaattgattggcttctttcggtcaccgattacgttgttgaaatggttccaacacagcagaaatccaaggatggttcaatcatggaggtaa |
3548714 |
T |
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| Q |
128 |
a |
128 |
Q |
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| T |
3548715 |
a |
3548715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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