View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_52 (Length: 332)

Name: NF10121_low_52
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_52
NF10121_low_52
[»] chr8 (12 HSPs)
chr8 (6-314)||(31909097-31909404)
chr8 (128-305)||(3479030-3479206)
chr8 (129-299)||(3785802-3785972)
chr8 (129-305)||(19472489-19472664)
chr8 (129-305)||(19543414-19543589)
chr8 (129-305)||(19589107-19589282)
chr8 (165-305)||(3788506-3788646)
chr8 (174-311)||(35416089-35416228)
chr8 (179-305)||(12062802-12062931)
chr8 (176-305)||(369296-369425)
chr8 (165-213)||(4678097-4678146)
chr8 (165-213)||(4676152-4676201)
[»] chr7 (8 HSPs)
chr7 (129-305)||(2576966-2577142)
chr7 (128-304)||(18446569-18446735)
chr7 (129-221)||(26389160-26389252)
chr7 (177-305)||(1773530-1773661)
chr7 (182-267)||(1715747-1715832)
chr7 (230-288)||(9457682-9457739)
chr7 (241-305)||(26389252-26389317)
chr7 (129-174)||(1773696-1773741)
[»] chr1 (5 HSPs)
chr1 (136-305)||(16385556-16385725)
chr1 (165-285)||(20225517-20225639)
chr1 (126-305)||(27356025-27356205)
chr1 (202-311)||(20226820-20226932)
chr1 (129-305)||(12685086-12685250)
[»] chr6 (5 HSPs)
chr6 (130-311)||(21146819-21147003)
chr6 (174-304)||(9664639-9664771)
chr6 (129-305)||(33638784-33638960)
chr6 (165-311)||(787289-787437)
chr6 (165-312)||(3074931-3075083)
[»] chr5 (5 HSPs)
chr5 (129-305)||(4215219-4215395)
chr5 (128-305)||(18587369-18587554)
chr5 (161-282)||(27172855-27172977)
chr5 (188-305)||(37498209-37498327)
chr5 (165-213)||(39040636-39040685)
[»] chr2 (2 HSPs)
chr2 (165-312)||(26608007-26608155)
chr2 (129-314)||(20509104-20509288)
[»] scaffold0016 (1 HSPs)
scaffold0016 (129-305)||(48375-48554)
[»] chr3 (10 HSPs)
chr3 (165-311)||(20868697-20868847)
chr3 (176-311)||(27462140-27462277)
chr3 (165-313)||(24595227-24595377)
chr3 (166-312)||(447069-447217)
chr3 (165-311)||(20871335-20871490)
chr3 (175-305)||(51308823-51308955)
chr3 (165-223)||(35610819-35610878)
chr3 (230-305)||(51306418-51306493)
chr3 (257-311)||(27462290-27462344)
chr3 (90-126)||(2202937-2202973)
[»] chr4 (3 HSPs)
chr4 (165-311)||(55849419-55849568)
chr4 (129-297)||(46432428-46432596)
chr4 (174-263)||(55852053-55852144)
[»] scaffold0889 (1 HSPs)
scaffold0889 (249-296)||(3292-3339)
[»] scaffold0870 (1 HSPs)
scaffold0870 (249-296)||(3496-3543)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 31909404 - 31909097
Alignment:
Q  6 tgaactcaattgatgtgaatctttggtgtgtagctattttagacatcaatatcatcttaaaacccgatccattatgatggatcagattcactgtgataaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909404 tgaactcaattgatgtgaatctttggtgtgtagctattttagacatcaatatcatcttaaaacccgatccattatgatggatcagattcactgtgataaa 31909305  T
Q  106 tcctgattcattttaatgaatcatgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttg 205  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31909304 tcatgattcattctaatgaatcatgttgaaatatagatagtaatactcattttagagtaagttaaggtactagtttagtcactatataagtcacaagttg 31909205  T
Q  206 actcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31909204 actcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatg-catgtttc 31909106  T
Q  306 ctaacaaat 314  Q
    |||||||||    
T  31909105 ctaacaaat 31909097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 128 - 305
Target Start/End: Original strand, 3479030 - 3479206
Alignment:
Q  128 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||  | ||||||    
T  3479030 atgttgaaatatagatagttatactcattttagagttagttagggtattagtttagtccctacataagtcacaagttgactcatttgtac--cgctcttt 3479127  T
Q  228 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttc 305  Q
    || | ||| |||||||||||||| ||||||||| ||  ||| |||| |||| |||||||||||||||||| ||||||||    
T  3479128 cactgttgcatcttttcaactattatcaatacagtaattttttaagtttttttctctattttcatggatgtcatgtttc 3479206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 129 - 299
Target Start/End: Complemental strand, 3785972 - 3785802
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 228  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||  || || |||     
T  3785972 tgttgaaatatagatagtgatactcattttagagttagttagggtactactatagtcactatataagtcacaagttgactcatttgta--tcactttttt 3785875  T
Q  229 att-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttctctctattttcatggatgcca 299  Q
    ||| ||||||| |||||||||| ||||||||||||  ||  ||||||| ||||||||||||||||||||||||    
T  3785874 attcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctctattttcatggatgcca 3785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 129 - 305
Target Start/End: Complemental strand, 19472664 - 19472489
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19472664 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19472569  T
Q  228 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 305  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19472568 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19472489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 129 - 305
Target Start/End: Complemental strand, 19543589 - 19543414
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19543589 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19543494  T
Q  228 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 305  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19543493 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 19589107 - 19589282
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagtt-agggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19589107 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19589202  T
Q  228 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 305  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19589203 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19589282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 3788646 - 3788506
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 263  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||||  || || ||||||| ||||||| |||||||||| ||||||||||||     
T  3788646 agttagggtactagtatagtcactgtataagtcacaagttgacccatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaataa 3788549  T
Q  264 ctttgtaagctt-ttctctctattttcatggatgccatgtttc 305  Q
     ||| ||| ||| ||||||||||||||||||||||||||||||    
T  3788548 ttttctaaacttcttctctctattttcatggatgccatgtttc 3788506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 35416228 - 35416089
Alignment:
Q  174 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 271  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| | |||  |||||| ||||||| ||||||||| ||| |||||||||| |||  ||    
T  35416228 actagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagtttttcaa 35416129  T
Q  272 gcttttctctctattttcatggatgccatgtttcctaaca 311  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  35416128 gcttttctctctatttttatggatgccatgtttcttaaca 35416089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 12062802 - 12062931
Alignment:
Q  179 tttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaatagctttgtaagctt 275  Q
    |||||| ||||||||||||||| | ||||||||||||||||    ||||||||| ||||||  |||||||| |||||||| | ||||| ||| |||||||    
T  12062802 tttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttgtattattttcaaccatcatcaagagaatagttttctaagctt 12062901  T
Q  276 ttctctctattttcatggatgccatgtttc 305  Q
    ||||||||||||||||||||||||||||||    
T  12062902 ttctctctattttcatggatgccatgtttc 12062931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 369296 - 369425
Alignment:
Q  176 tagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaagc 273  Q
    ||||||||| |||| |||||||| | | ||| || |||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||  |||||||     
T  369296 tagtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatcttttcaactatcatcaatacaatag--ttgtaagt 369393  T
Q  274 ttttctctctattttcatggatgccatgtttc 305  Q
    |||||||| |||||||||||||| ||||||||    
T  369394 ttttctctttattttcatggatgtcatgtttc 369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 4678097 - 4678146
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaa-gttgactcattt 213  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  4678097 agttagagtactagtttagttactatataagtcacaaggttgactcattt 4678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 4676152 - 4676201
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcaca-agttgactcattt 213  Q
    |||||| ||||||||||||| |||||||||||||||  ||||||||||||    
T  4676152 agttagagtactagtttagttactatataagtcacagggttgactcattt 4676201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 2576966 - 2577142
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 228  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  || || ||||    
T  2576966 tgttgaaatatagatagtgatactcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgta--tcactttttc 2577063  T
Q  229 att-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttctctctattttcatggatgccatgtttc 305  Q
    ||| ||||||| |||||||||| ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  2577064 attcttgtatcatttcaactattatcaatacaataattttctaagcttcttctctctattttcatggatgccatgtttc 2577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 304
Target Start/End: Original strand, 18446569 - 18446735
Alignment:
Q  128 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    |||||||||||||| |||| |||||||||||||||| |||||| | ||||||| |||||||||||||||||| |||||| || ||||||  ||| |||||    
T  18446569 atgttgaaatatagttagttatactcattttagagttagttagtgcactagttcagtcactatataagtcactagttgattc-tttgta--tctttcttt 18446665  T
Q  228 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgttt 304  Q
    || ||||||||| |||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  18446666 cacttttgtatcatttcaactattatcaatacaatagct--------ttttctctctattttcatggatgccatgttt 18446735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 26389160 - 26389252
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctct 221  Q
    ||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26389160 tgttgaaatataggtagttatactcattttagagttagttagtgtactagtttagtcactatataagtcacaagttgactcttttgtatctct 26389252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 1773661 - 1773530
Alignment:
Q  177 agtttagtcactatataagtcaca-agttgactcatttgtacctctctctttcattt-tgtatcttttcaactatcatcaatacaatagctttgtaagct 274  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||| || ||  | | | |||| |||| ||||| |||||||||||| |||||||||||    
T  1773661 agtttagtcactatattagtcacagagttgactcatttgtatctctttcatttttgtatatatcatttctactattatcaatacaataactttgtaagct 1773562  T
Q  275 ttt-ctctctattttcatggatgccatgtttc 305  Q
    ||| ||||||||||| ||||||| ||||||||    
T  1773561 tttactctctatttttatggatgtcatgtttc 1773530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 1715832 - 1715747
Alignment:
Q  182 agtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagcttt 267  Q
    ||||||||||||||| || ||||||||| |||||| |||||| ||||| |||| |||| |||||||||| |||||||||||| ||||    
T  1715832 agtcactatataagttactagttgactcttttgtatctctct-tttcacttttatatcatttcaactattatcaatacaataacttt 1715747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 9457682 - 9457739
Alignment:
Q  230 ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctatttt 288  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  9457682 ttttgtatcattttaactatcatcaatacaatagctttgtaag-ttttttctctatttt 9457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 26389252 - 26389317
Alignment:
Q  241 ttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 305  Q
    ||||||||| ||||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||    
T  26389252 ttcaactattatcaatacaataattttctaagttttttctctctattttcatggatgccatgtttc 26389317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 1773741 - 1773696
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggta 174  Q
    ||||||| ||||| |||| |||||||||||||||| ||||||||||    
T  1773741 tgttgaattataggtagttatactcattttagagttagttagggta 1773696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 136 - 305
Target Start/End: Original strand, 16385556 - 16385725
Alignment:
Q  136 atatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttg 234  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||| |||||    
T  16385556 atatagatagttatactcattttagagttagttagggtactagtttagtcactgtataagtcacaagttgactcatttgtac--atctctttcatttttg 16385653  T
Q  235 tatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 305  Q
    |||| |||   |||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  16385654 tatcattttccctataatcaatacaataactttgtaagctttttctttctattttcatggatgccatgtttc 16385725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 20225639 - 20225517
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 262  Q
    |||||||  ||||||||||| ||||||||||||||| | ||||||| ||||||||| ||| || |||| ||||||| |||||| ||||||||||||||||    
T  20225639 agttaggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatacaata 20225540  T
Q  263 gctttgtaagcttttctctctat 285  Q
    | |||| ||||||||||||||||    
T  20225539 gttttgcaagcttttctctctat 20225517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 305
Target Start/End: Complemental strand, 27356205 - 27356025
Alignment:
Q  126 tcatgttgaaatatagatagtaatactcatttt-agagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctc 224  Q
    ||||||| |||||||| |||| ||| ||||||| || || |||||| |||||| |||||||||| |||||| || ||||||| | || ||||  ||||||    
T  27356205 tcatgttaaaatataggtagttatagtcatttttagtgttagttagtgtactaatttagtcactgtataagacataagttgaattatatgta--tctctc 27356108  T
Q  225 tttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 305  Q
    ||||||||| ||||| |||  |||||||||||||||||| | || ||||  |||||||||| ||||||||| | |||||||||    
T  27356107 tttcatttttgtatcattttcactatcatcaatacaataaccttttaagttttttctctcttttttcatgggtaccatgtttc 27356025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 20226932 - 20226820
Alignment:
Q  202 gttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagcttttct--ctctattttcatggatgcc 298  Q
    |||||||| ||||||||| ||| ||||||| ||||||| |||||| ||||||||||||||||| |||  || |||||||  |||||| | |||| |||||    
T  20226932 gttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatccatgaatgcc 20226833  T
Q  299 atgtttcctaaca 311  Q
     ||||||||||||    
T  20226832 gtgtttcctaaca 20226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 12685086 - 12685250
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 228  Q
    ||||||||||||| |||| |||||||||||||||| |||||| |||| |||| |||||||            ||||||||| ||||||  |||||||||     
T  12685086 tgttgaaatatagttagttatactcattttagagttagttagtgtacgagttcagtcact------------agttgactcttttgta--tctctcttta 12685171  T
Q  229 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 305  Q
    | |||| |||| |||  ||||| ||||||| |||| |||| |||| |||| ||||||||||| ||||||||||||||||    
T  12685172 acttttatatcattttcactattatcaatataataactttctaagcctttcctctctatttttatggatgccatgtttc 12685250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 311
Target Start/End: Complemental strand, 21147003 - 21146819
Alignment:
Q  130 gttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcact--atataagtcacaagttgactcatttgtacctctctcttt 227  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |   ||||||||||| |||||||||||||||||||||| |||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagttagggtactagttttgtcaatgactataagtcacatgttgactcatttgtacctctct-ttt 21146905  T
Q  228 catt-ttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttcctaaca 311  Q
    |||| ||||||| ||||||||||  |||||||||||  ||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  21146904 cattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctattttcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 9664771 - 9664639
Alignment:
Q  174 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 271  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  ||    
T  9664771 actagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagtttttcaa 9664672  T
Q  272 gcttttctctctattttcatggatgccatgttt 304  Q
    |||||||||||||| | ||||||||||||||||    
T  9664671 gcttttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 305
Target Start/End: Complemental strand, 33638960 - 33638784
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 228  Q
    |||||||||||||  ||| ||||| |||||||||| |||||| ||| ||||||| ||  ||||||||||| |||||||||| |||||| |||||| ||      
T  33638960 tgttgaaatatagg-agttatacttattttagagttagttagtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaa 33638862  T
Q  229 attttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 305  Q
     |||||||||| ||||| ||| ||||| ||||||  |||  |||  ||||||||||||||||||||||||||||||||    
T  33638861 cttttgtatctcttcaattattatcaagacaataattttcaaagttttttctctctattttcatggatgccatgtttc 33638784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 787289 - 787437
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 262  Q
    |||||||  ||||||||||| ||||||||||||| | | ||||||||||||||||  ||| | ||||| ||||||| |||||| ||||||||||||||||    
T  787289 agttaggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaata 787388  T
Q  263 gctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 311  Q
    | |||  || ||||||||||||| |  ||||||| ||||||||||||||    
T  787389 gttttccaaacttttctctctatatctatggatgacatgtttcctaaca 787437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 312
Target Start/End: Original strand, 3074931 - 3075083
Alignment:
Q  165 agttagggtactagtttagtcactatata--agtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaa-taca 259  Q
    |||||||  ||||||||||| ||||||||  | ||||| | ||| |||||||||| || ||| || |||| || |||| |||||||||||||||| ||||    
T  3074931 agttaggacactagtttagttactatatataaatcacatggttgtctcatttgtatctatcttttccattcttatatcatttcaactatcatcaaataca 3075030  T
Q  260 atagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 312  Q
    |||| |||  |||||||||||||||| | |||||||||||||||| |||||||    
T  3075031 atagttttccaagcttttctctctatatccatggatgccatgttttctaacaa 3075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 4215219 - 4215395
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 228  Q
    ||||||||||||| |||| |||||||||| ||||| |||||| | ||||||| |||||||||||||||||  ||||||||| |||||| |||||| ||||    
T  4215219 tgttgaaatatagttagttatactcattt-agagttagttagtgcactagttgagtcactatataagtcattagttgactcttttgtatctctct-tttc 4215316  T
Q  229 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 305  Q
    | |||| |||| |||||||||| |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||    
T  4215317 acttttatatcatttcaactattatcaatacaataactttctaagctttttctctccattttcatggatgccatgtttc 4215395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 305
Target Start/End: Complemental strand, 18587554 - 18587369
Alignment:
Q  128 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtac---ctct-- 221  Q
    |||||||||||||| |||| ||||| |||||||||| ||||||||||||||||  || |||||||||||||||| ||||| ||||||||||   ||||      
T  18587554 atgttgaaatataggtagttatacttattttagagttagttagggtactagttaggttactatataagtcacaaggttgattcatttgtaccgactcttt 18587455  T
Q  222 -ctctttcat-tttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 305  Q
      |||||||| |||||||| ||| |||||||||||||| || |  ||| ||||  |||||||||||||| |||||||||||||||||    
T  18587454 catctttcatctttgtatcattttaactatcatcaatataa-atttttctaagttttttctctctatttccatggatgccatgtttc 18587369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 161 - 282
Target Start/End: Complemental strand, 27172977 - 27172855
Alignment:
Q  161 agtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaataca 259  Q
    ||||||||||| |||||||||||| |||||||||||||  || ||||||||||||| || ||| || |||| ||||||| |||||||||||||||||| |    
T  27172977 agtaagttaggatactagtttagttactatataagtcattaggtgactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaataga 27172878  T
Q  260 atagctttgtaagcttttctctc 282  Q
    |||| |||  |||||||||||||    
T  27172877 atagttttccaagcttttctctc 27172855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 305
Target Start/End: Complemental strand, 37498327 - 37498209
Alignment:
Q  188 tatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctat 285  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |||| |||||||||||||||||||||||   || ||||  ||||||||| ||    
T  37498327 tatataagtcacaagttgactcatttgtacccct-tcttttacttttatatcatttcaactatcatcaatacaataatcttctaagttttttctctccat 37498229  T
Q  286 tttcatggatgccatgtttc 305  Q
    ||||||||||||||| ||||    
T  37498228 tttcatggatgccatatttc 37498209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 39040685 - 39040636
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaa-gttgactcattt 213  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  39040685 agttagagtactagtttagttactatataagtcacaaggttgactcattt 39040636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 165 - 312
Target Start/End: Complemental strand, 26608155 - 26608007
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaat 261  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||||    
T  26608155 agttaggatactagttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaatacaat 26608056  T
Q  262 agctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 312  Q
    |  ||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  26608055 a--tttctaagcttttctctctattttcatggatgtcatgtttcttaacaa 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 129 - 314
Target Start/End: Complemental strand, 20509288 - 20509104
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttaggg-tactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    |||| |||||||  |||| |||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||| ||  |||||||||    
T  20509288 tgttaaaatataagtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttata--tctctcttt 20509191  T
Q  228 cattttgtatcttttcaactatcatcaatacaatagctttgtaagct-tttctctctattttcatggatgccatgtttcctaacaaat 314  Q
    |||||| | | ||||||||||  ||| ||| ||||  |||  | | | |||||||||||||||||||||| ||||||||  |||||||    
T  20509190 catttt-tgtattttcaactagtatcgatataataattttcgacgttgtttctctctattttcatggatgtcatgtttctcaacaaat 20509104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 129 - 305
Target Start/End: Original strand, 48375 - 48554
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 227  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||| |||| || ||||||||||||||||||||||| || |||||| || ||| ||     
T  48375 tgttgaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttc 48474  T
Q  228 cattttgtatcttttcaactatcatcaatacaatagctttgtaagctt--ttctctctattttcatggatgccatgtttc 305  Q
     ||||||||||  |||||| || ||||||||||||  ||| |||||||  ||||||||| ||||||||||| ||||||||    
T  48475 aattttgtatcccttcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttc 48554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 20868697 - 20868847
Alignment:
Q  165 agttagggtactagttt-agtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatctt-ttcaactatcatcaatacaa 260  Q
    ||||||| ||||||||| ||| ||||||||||||||| | |||||| |||||||||| ||| ||||||| ||||||  | ||||||||||||||||||||    
T  20868697 agttaggatactagttttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaatacaa 20868796  T
Q  261 tagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 311  Q
    ||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  20868797 tagttttctaagcttttctctctcttttcatggatgccatgtttcccaaca 20868847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 27462140 - 27462277
Alignment:
Q  176 tagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagc 273  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  ||||    
T  27462140 tagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagc 27462239  T
Q  274 ttttctctctattttcatggatgccatgtttcctaaca 311  Q
    |||||||||||| | |||||||||||||||| ||||||    
T  27462240 ttttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 24595227 - 24595377
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaat 261  Q
    |||||||  ||||||||||| ||||||||||||||| | |||||||||||||||   ||| ||||||| ||||||| |||||||||||||||||||||||    
T  24595227 agttaggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaat 24595326  T
Q  262 agctttgtaagcttttctctctattttcatggatgccatgtttcctaacaaa 313  Q
    || ||| ||||||||||||||||| ||||||||||   ||||||||||||||    
T  24595327 ag-tttctaagcttttctctctatcttcatggatgttgtgtttcctaacaaa 24595377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 447217 - 447069
Alignment:
Q  166 gttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtacctctctctttcattttg-tatcttttcaactatcatcaatacaatag 263  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||  ||||||||  |||| ||||||||| ||| ||||||| ||    
T  447217 gttagggtactagtttagatactatagaagtcacaaagttgactcatttgtacctctct--ttcatttttctatcatttcaactaccataaatacaacag 447120  T
Q  264 ctttgtaagctttt--ctctctattttcatggatgccatgtttcctaacaa 312  Q
    ||||||||| ||||  ||||||| |||||||||| ||||||||| ||||||    
T  447119 ctttgtaagtttttttctctctagtttcatggataccatgtttcttaacaa 447069  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 20871335 - 20871490
Alignment:
Q  165 agttagggtactagttt-agtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaat---- 256  Q
    ||||||| ||||||||| ||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||||||        
T  20871335 agttaggatactagttttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaatacaa 20871434  T
Q  257 -acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 311  Q
     ||||||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||    
T  20871435 tacaatagttttctaagcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 305
Target Start/End: Original strand, 51308823 - 51308955
Alignment:
Q  175 ctagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaag 272  Q
    ||||| |||| ||||||||||||||| | |||||||||||||||   ||||||| ||| ||||||| |||||||||| ||||||||||||  ||| ||||    
T  51308823 ctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataa-tttataag 51308921  T
Q  273 ctttt-ctctctattttcatggatgccatgtttc 305  Q
    ||||| ||||||||||||||||||| ||||||||    
T  51308922 ctttttctctctattttcatggatgtcatgtttc 51308955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 35610819 - 35610878
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtacctctct 223  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  35610819 agttagggtactagtttagttactatataagtcacaaggttgactcatttgtacatctct 35610878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 51306418 - 51306493
Alignment:
Q  230 ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 305  Q
    ||||||||| ||| |||||| ||||||||||||  ||| ||||||||| ||||||||||||||||||| ||||||||    
T  51306418 ttttgtatcattttaactattatcaatacaataa-tttctaagctttttctctctattttcatggatgtcatgtttc 51306493  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  257 acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 311  Q
    ||||||| |||  |||||||||||||||| | |||||||||||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 2202937 - 2202973
Alignment:
Q  90 gattcactgtgataaatcctgattcattttaatgaat 126  Q
    |||||||| |||||||||| |||||||||||||||||    
T  2202937 gattcactatgataaatcccgattcattttaatgaat 2202973  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 311
Target Start/End: Complemental strand, 55849568 - 55849419
Alignment:
Q  165 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 262  Q
    |||||||  ||||||| ||| ||||||||||||||| | ||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||||||||    
T  55849568 agttaggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatacaata 55849469  T
Q  263 gctttgt-aagcttttctctctattttcatggatgccatgtttcctaaca 311  Q
    | |||   |||||||||||||||| | |||||||||||||||||||||||    
T  55849468 gttttcccaagcttttctctctatatccatggatgccatgtttcctaaca 55849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 297
Target Start/End: Original strand, 46432428 - 46432596
Alignment:
Q  129 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 228  Q
    |||| |||| ||| |||| |||||||||||||||| |||||| | |||| |||||||||  || ||||||| ||||||||| ||| ||  || |||||||    
T  46432428 tgttaaaatgtagttagttatactcattttagagttagttagtgcactaatttagtcaccgtaaaagtcactagttgactcttttata--tccctctttc 46432525  T
Q  229 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgc 297  Q
    | ||||||||| |||  ||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  46432526 acttttgtatcatttttactattatcaatacaataattttgtaagcttttcctctctattttcatggatgc 46432596  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 55852144 - 55852053
Alignment:
Q  174 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 263  Q
    ||||| ||||| ||||||||| | ||| | ||||||||||||||  | ||| || |||| ||||||| ||||||||||||||||||||||||    
T  55852144 actagattagttactatataactaacatggttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatag 55852053  T

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Target: scaffold0889 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 3339 - 3292
Alignment:
Q  249 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 296  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3339 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 3543 - 3496
Alignment:
Q  249 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 296  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3543 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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