View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_53 (Length: 328)
Name: NF10121_low_53
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 40855432 - 40855741
Alignment:
| Q |
1 |
tccctttggctatctgatgtgatggccttccaaagcaatttccagccctatgttgaagaaatcatattggaggatgatattaacaagttcactgccttta |
100 |
Q |
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| T |
40855432 |
tccctttggctatctgatgtgatggccttccaaagcaatttccagccctatgttgaagaaatcatattggaggatgatattaacaagttcactgccttta |
40855531 |
T |
|
| Q |
101 |
tttctatcagttcagtagtactagcaagtgatgacaggcaatagttggtcacattcttaatcccaaatatggggctttttaaccttttccattctgacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855532 |
tttctatcagttcagtagtactagcaagtgatgacaggcattagttggtcacattcttaatcccaaatatggggctttttaaccttttccattctgacat |
40855631 |
T |
|
| Q |
201 |
aatgctattgaatgtgtgtccaagtaataataatttgaaatttttagtttgtatgtgtggccacacttttaatccttttattcatctattcctaatttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855632 |
aatgctattgaatgtgtgtccaagtaataataatttgaaatttttagtttgtacgtgtggccacacttttaatccttttattcatctattcctaatttgt |
40855731 |
T |
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| Q |
301 |
tttctttgat |
310 |
Q |
| |
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|||||||||| |
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| T |
40855732 |
tttctttgat |
40855741 |
T |
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