View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_54 (Length: 328)
Name: NF10121_low_54
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 15423475 - 15423781
Alignment:
| Q |
18 |
acatcaaattaccagggaccctttccctgggaacctaaaggttaagacacnnnnnnnnn-ctaattttcttatggaaatg------------ttcctttc |
104 |
Q |
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| T |
15423475 |
acatcaaattaccagggaccctttcactgggaacctaaaggttaagacacaaaaaaaaaactaattttctcatggaaatgttattggcaatgttcctttc |
15423574 |
T |
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| Q |
105 |
aaattaatatttgcaagataactgttgttgcttccttaatggcttttacctgatatccttgtattcaattccctgatacaaatattgtaatatgcagagg |
204 |
Q |
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| T |
15423575 |
aaattaatatttgcaagataactgttgttgcttccttaatggcttttacctgatatccttgtattcaattccctgatacaaatattgtaatatgcagagg |
15423674 |
T |
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| Q |
205 |
aaagttttcatgagttcaaccattttggagatagaattcttttcatctgttctggttggatttctcatggtatccctaatattagcctctatagcataga |
304 |
Q |
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| T |
15423675 |
aaagttttcatgagttcaaccattttggagatggaattcttttcatctgttctggttggatttctcatggaatccctaatattagcctctatagcataga |
15423774 |
T |
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| Q |
305 |
ggtaata |
311 |
Q |
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||||||| |
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| T |
15423775 |
ggtaata |
15423781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 15431781 - 15431856
Alignment:
| Q |
96 |
gttcctttcaaattaatatttgcaagataactgttgttgcttccttaatggcttttacctgatatccttgtattcaatt |
174 |
Q |
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| T |
15431781 |
gttcctttcaaattattatttgcttgataattgttgtt---tccttaatggcctttccctgatatcctcgtgttcaatt |
15431856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 15431945 - 15431999
Alignment:
| Q |
220 |
tcaaccattttggagatagaattcttttcatctgttctggttggatttctcatgg |
274 |
Q |
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|||| ||||||| ||||||| || |||||||||||||||||||| ||||||||| |
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| T |
15431945 |
tcaaacattttgtagatagacttactttcatctgttctggttggacttctcatgg |
15431999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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