View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_55 (Length: 324)
Name: NF10121_low_55
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 31474370 - 31474665
Alignment:
| Q |
18 |
ttgtccaacttcaaaaactcaaacaccatattccaggannnnnnnatataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgt |
117 |
Q |
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| T |
31474370 |
ttgtccaacttcaaaaactcagacaccatgatccaggatttttttatataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgt |
31474469 |
T |
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| Q |
118 |
tgccaaatacggtttccaaatcccaccttttaagtaaatcttctatgtgcctcctattattcatcatgaaaagattgcgcaaagcaaggtctctgtactc |
217 |
Q |
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| T |
31474470 |
tgccaaatacggtttccaaatcccaccttttaagtaaatcttctatgtgcctcctattattcatcatgaaaagattgcgcaaagcaaggtctctgtactc |
31474569 |
T |
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| Q |
218 |
tttggatttaccattcaattttttctctaacatatccattatccattccatctgttttataaaagaatctttcagcactactccattattctcctt |
313 |
Q |
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| T |
31474570 |
tttggatttaccattcaattttttctctaacatatccattatccattccatctgttctataaaagaatctttcagcactactccattattcacctt |
31474665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 65 - 313
Target Start/End: Original strand, 40841977 - 40842225
Alignment:
| Q |
65 |
ataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgttgccaaatacggtttccaaatcccaccttttaagtaaatcttctatg |
164 |
Q |
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| T |
40841977 |
ataaagatcaaggtcttgttggaatttcgcttgatttctttggaaccaatcattaccaaatatggtttccaagtccaagcttttaatcatagcttctatg |
40842076 |
T |
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| Q |
165 |
tgcctcctattattcatcatgaaaagattgcgcaaagcaaggtctctgtactctttggatttaccattcaattttttctctaacatatccattatccatt |
264 |
Q |
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| T |
40842077 |
tgcctcctattattcatcatgaaaagatagcgcaaagcaagttctctgtactctttggacttatatgtcaatcttttctctaacatatccattatccatt |
40842176 |
T |
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| Q |
265 |
ccatctgttttataaaagaatctttcagcactactccattattctcctt |
313 |
Q |
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| T |
40842177 |
ccatctgttctataaaagaatctttcactactactccattattcacctt |
40842225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 31405553 - 31405625
Alignment:
| Q |
64 |
tataaagatcaaggtcttgttggaattttgcttgatttttctggaaccaatcgttgccaaatacggtttccaa |
136 |
Q |
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| T |
31405553 |
tataaagatcaaggttttgttggatttttgctttgttattttggaaccaatcattaccaaaaatggtttccaa |
31405625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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