View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_56 (Length: 323)

Name: NF10121_low_56
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_56
NF10121_low_56
[»] chr5 (3 HSPs)
chr5 (1-306)||(5060088-5060397)
chr5 (249-307)||(37125164-37125222)
chr5 (252-288)||(731533-731569)
[»] chr1 (3 HSPs)
chr1 (227-305)||(34111097-34111175)
chr1 (227-291)||(14343138-14343202)
chr1 (227-263)||(37921725-37921761)
[»] chr3 (2 HSPs)
chr3 (227-287)||(4980877-4980937)
chr3 (240-288)||(38074686-38074734)
[»] chr2 (5 HSPs)
chr2 (248-291)||(8393699-8393742)
chr2 (248-291)||(36847246-36847289)
chr2 (248-291)||(44462198-44462241)
chr2 (237-288)||(44659078-44659129)
chr2 (248-288)||(15577652-15577692)
[»] chr8 (1 HSPs)
chr8 (249-298)||(29803249-29803298)
[»] chr7 (1 HSPs)
chr7 (237-290)||(30864923-30864975)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 5060088 - 5060397
Alignment:
Q  1 atatgaggaggcagatgagcagtttcctggaaagtctcactcatgagatgtattattggtccacaatataatgagtaatgtttggaattaattcaatgtc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5060088 atatgaggaggcagatgagcagtttcatggaaagtctcactcatgagatgtattattggtccacaatataatgagtaatgtttggaattaattcaatgtc 5060187  T
Q  101 ttattgtattgtccatttacttcatttctca----ggttacatttataaataattttacnnnnnnnnncagattcattaaataacatatgtatttttagt 196  Q
    ||||||||||||||||||||||||||| ||     ||||||||||||||||||||||           || ||||||||||||| |||||||||| ||||    
T  5060188 ttattgtattgtccatttacttcatttttcgatcgggttacatttataaataatttt-tgctttttttcaaattcattaaataatatatgtatttctagt 5060286  T
Q  197 tccttc-nnnnnnncatatgtatatggattgtaatatagttcaaatacatacgttatttaatgaatttgaaaatgtaaaagttatttataaatatggtcg 295  Q
    ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5060287 tccttcaaaaaaagcatatgtatatggattgtaatatagttcaaatacatacgttatttaatgaatttgaaaatgtaaaagttacttataaatatggtcg 5060386  T
Q  296 gagggggtata 306  Q
    |||||||||||    
T  5060387 gagggggtata 5060397  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 37125164 - 37125222
Alignment:
Q  249 ttatttaatgaatttgaaaatgtaaaagttatttataaatatggtcggagggggtatat 307  Q
    ||||||||| ||||||||||  |||||||| |||||||||||  |||||||| ||||||    
T  37125164 ttatttaataaatttgaaaaaataaaagttgtttataaatattatcggagggagtatat 37125222  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 731533 - 731569
Alignment:
Q  252 tttaatgaatttgaaaatgtaaaagttatttataaat 288  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  731533 tttaatgaatttgaaaaagtaaaagttgtttataaat 731569  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 34111175 - 34111097
Alignment:
Q  227 taatatagttcaaatacatacgttatttaatgaatttgaaaatgtaaaagttatttataaatatggtcggagggggtat 305  Q
    ||||||||||||| |||||   ||||||||||||| ||||||  |||||||| |||||||||||| || ||||| ||||    
T  34111175 taatatagttcaattacattatttatttaatgaatatgaaaaaataaaagttgtttataaatatgatcagagggagtat 34111097  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 14343202 - 14343138
Alignment:
Q  227 taatatagttcaaatacatacgttatttaatgaatttgaaaatgtaaaagttatttataaatatg 291  Q
    ||||||||| || ||| ||  |||||||||||||| |||||| | |||| |||||||||||||||    
T  14343202 taatatagtccatataaattagttatttaatgaatctgaaaaagcaaaaattatttataaatatg 14343138  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 37921725 - 37921761
Alignment:
Q  227 taatatagttcaaatacatacgttatttaatgaattt 263  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  37921725 taatatagtccaaatacataagttatttaatgaattt 37921761  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 4980877 - 4980937
Alignment:
Q  227 taatatagttcaaatacatacgttatttaatgaatttgaaaatgtaaaagttatttataaa 287  Q
    ||||| |||| | |||||||  |||||||||||||||||||| ||||||||| ||||||||    
T  4980877 taataaagtttagatacataaattatttaatgaatttgaaaaagtaaaagttgtttataaa 4980937  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 38074686 - 38074734
Alignment:
Q  240 atacatacgttatttaatgaatttgaaaatgtaaaagttatttataaat 288  Q
    ||||||| |||||||||||||| |||||||| ||||||| |||||||||    
T  38074686 atacataagttatttaatgaatctgaaaatgaaaaagttgtttataaat 38074734  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 8393742 - 8393699
Alignment:
Q  248 gttatttaatgaatttgaaaatgtaaaagttatttataaatatg 291  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||    
T  8393742 gttatttaatgaatttaaaaaagtaaaagttgtttataaatatg 8393699  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 36847289 - 36847246
Alignment:
Q  248 gttatttaatgaatttgaaaatgtaaaagttatttataaatatg 291  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||    
T  36847289 gttatttaatgaatttaaaaaagtaaaagttgtttataaatatg 36847246  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 44462198 - 44462241
Alignment:
Q  248 gttatttaatgaatttgaaaatgtaaaagttatttataaatatg 291  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||    
T  44462198 gttatttaatgaatttaaaaaagtaaaagttgtttataaatatg 44462241  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 44659129 - 44659078
Alignment:
Q  237 caaatacatacgttatttaatgaatttgaaaatgtaaaagttatttataaat 288  Q
    ||||||||||  ||||||||||||||||||||   |||||||||||||||||    
T  44659129 caaatacataacttatttaatgaatttgaaaaataaaaagttatttataaat 44659078  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 15577652 - 15577692
Alignment:
Q  248 gttatttaatgaatttgaaaatgtaaaagttatttataaat 288  Q
    |||||||||||||||| |||| ||||||||| |||||||||    
T  15577652 gttatttaatgaatttaaaaaagtaaaagttgtttataaat 15577692  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 29803298 - 29803249
Alignment:
Q  249 ttatttaatgaatttgaaaatgtaaaagttatttataaatatggtcggag 298  Q
    ||||||||||||| | |||| ||||||||| |||||||||||| ||||||    
T  29803298 ttatttaatgaatataaaaaagtaaaagttgtttataaatatgatcggag 29803249  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 30864975 - 30864923
Alignment:
Q  237 caaatacatacgttatttaatgaatttgaaaatgtaaaagttatttataaatat 290  Q
    ||||||||||  ||||||||| ||| |||||||||||||||| |||||||||||    
T  30864975 caaatacataacttatttaat-aatctgaaaatgtaaaagttgtttataaatat 30864923  T

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