View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_58 (Length: 321)
Name: NF10121_low_58
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 34314694 - 34314390
Alignment:
| Q |
1 |
gataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagagagtagtatatat--tattaatttctannnn |
98 |
Q |
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| T |
34314694 |
gataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagagagtagtatatatattattaattcctatttt |
34314595 |
T |
|
| Q |
99 |
nnnnnnnaagaaatcaaaacggaatatattaaaaacaaagagactatttccttaacataaagtatgtaagagaaaatagcagaaaagttacaatagagat |
198 |
Q |
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| T |
34314594 |
ttttt--acgaaatcaaaatgaaatatattaagaactaagagtctattcccttagcataaaatatgtaagagaagatagtcgaaaagttacgatagagat |
34314497 |
T |
|
| Q |
199 |
tcagacagaatgatcacaaattaactgattctcaaacatatttacaatatcaaccatcgtgaactctcacaaacaaattgttcacttgatataatactcc |
298 |
Q |
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||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
34314496 |
tcatacagaatgatcacaaattagctgattccgaaacatatttataatatcaaccatcgtgaactctcacaaacaaattgttcgcttgatataacactcc |
34314397 |
T |
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| Q |
299 |
tcttttg |
305 |
Q |
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||||||| |
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| T |
34314396 |
tcttttg |
34314390 |
T |
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