View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_61 (Length: 310)

Name: NF10121_low_61
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_61
NF10121_low_61
[»] chr8 (1 HSPs)
chr8 (14-303)||(11612657-11612946)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 11612657 - 11612946
Alignment:
Q  14 caaaggataagcttacaagggttatcttagaaattgcttaatgttaaagattttgttatggttggttggtatgactgtgagagtggacctgttacagttc 113  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11612657 caaaggataagcttaaaagggttacattagaaattgcttaatgttaaagattttgttatggttggttggtgtgactgtgagagtggacctgttacagttc 11612756  T
Q  114 agctggtctttatcttcaacatgaagccttttttaattttcatgtttctatatagtttggtatgatgtaatctagcttctgcttttgtcctcactctaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11612757 agctggtctttatcttcaacatgaagccttttttaattttcatgtttctatatagtttggtatgatgtaatctagcttctgcttttgtcctcactctaat 11612856  T
Q  214 tgattttgtaaattatttccattgatctagtttcttctgcatgtttggtttgccttttagtcttaaggtccttttctttttcctttgctt 303  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11612857 tgattttgtaaagtatttccattgatctagtttcttctgcatgtttggtttgccttttagtcttaaggtccttttctttttcctttgctt 11612946  T

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