View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_62 (Length: 307)
Name: NF10121_low_62
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 286
Target Start/End: Original strand, 2242088 - 2242344
Alignment:
| Q |
30 |
atcttgatttgttttgaggggttgaaaacctgaacttcgtagtttgcaaccacagtttttgtcattttagtttatgatttggatctttggttatgttatg |
129 |
Q |
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| T |
2242088 |
atcttgatttgttttgaggggttgaaaacatgaacttcgtagtttgcaaccacagtttttgtcattttagtttatgatttggatctttggttatgttatg |
2242187 |
T |
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| Q |
130 |
ttgtagttcatgtcatatgaacttacaaattattagcttataaaatcgttcatttgttgactcaaaaattctaatatttttgttttgaagaggattatag |
229 |
Q |
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| T |
2242188 |
ttgaagttcatgtcatatgaacttacaaattattagcttataaaatcgttcatttgttgactcaaaaattctaatatttttgttttgaagaggatcatag |
2242287 |
T |
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| Q |
230 |
atttaggatggatacaaatacatgatgaagcatacatgtatacatagatgtaggacc |
286 |
Q |
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| T |
2242288 |
atttaggatggatacaaatacatgatgaagcatacatgtatacatagatgtaggacc |
2242344 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 34860691 - 34860617
Alignment:
| Q |
186 |
ttgactcaaaaattctaatatttttgttttgaagaggattatagatttaggatggatacaaatacatgatgaagc |
260 |
Q |
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||||||||||||| |||||||||||||| ||| ||||||||||||||| || | |||||||||||||||| |
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| T |
34860691 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagcctgcagggaaatacatgatgaagc |
34860617 |
T |
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