View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_63 (Length: 302)

Name: NF10121_low_63
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_63
NF10121_low_63
[»] chr8 (12 HSPs)
chr8 (17-284)||(31909097-31909363)
chr8 (98-275)||(3479030-3479206)
chr8 (99-269)||(3785802-3785972)
chr8 (99-275)||(19472489-19472664)
chr8 (99-275)||(19543414-19543589)
chr8 (99-275)||(19589107-19589282)
chr8 (135-275)||(3788506-3788646)
chr8 (144-281)||(35416089-35416228)
chr8 (149-275)||(12062802-12062931)
chr8 (146-275)||(369296-369425)
chr8 (135-183)||(4678097-4678146)
chr8 (135-183)||(4676152-4676201)
[»] chr7 (8 HSPs)
chr7 (99-275)||(2576966-2577142)
chr7 (98-274)||(18446569-18446735)
chr7 (99-191)||(26389160-26389252)
chr7 (147-275)||(1773530-1773661)
chr7 (152-237)||(1715747-1715832)
chr7 (200-258)||(9457682-9457739)
chr7 (211-275)||(26389252-26389317)
chr7 (99-144)||(1773696-1773741)
[»] chr1 (5 HSPs)
chr1 (106-275)||(16385556-16385725)
chr1 (135-255)||(20225517-20225639)
chr1 (96-275)||(27356025-27356205)
chr1 (172-281)||(20226820-20226932)
chr1 (99-275)||(12685086-12685250)
[»] chr6 (5 HSPs)
chr6 (100-281)||(21146819-21147003)
chr6 (144-274)||(9664639-9664771)
chr6 (99-275)||(33638784-33638960)
chr6 (135-281)||(787289-787437)
chr6 (135-282)||(3074931-3075083)
[»] chr5 (5 HSPs)
chr5 (99-275)||(4215219-4215395)
chr5 (98-275)||(18587369-18587554)
chr5 (131-252)||(27172855-27172977)
chr5 (158-275)||(37498209-37498327)
chr5 (135-183)||(39040636-39040685)
[»] chr2 (2 HSPs)
chr2 (135-282)||(26608007-26608155)
chr2 (99-284)||(20509104-20509288)
[»] scaffold0016 (1 HSPs)
scaffold0016 (99-275)||(48375-48554)
[»] chr3 (10 HSPs)
chr3 (135-281)||(20868697-20868847)
chr3 (146-281)||(27462140-27462277)
chr3 (135-283)||(24595227-24595377)
chr3 (136-282)||(447069-447217)
chr3 (135-281)||(20871335-20871490)
chr3 (145-275)||(51308823-51308955)
chr3 (135-193)||(35610819-35610878)
chr3 (200-275)||(51306418-51306493)
chr3 (227-281)||(27462290-27462344)
chr3 (60-96)||(2202937-2202973)
[»] chr4 (3 HSPs)
chr4 (135-281)||(55849419-55849568)
chr4 (99-267)||(46432428-46432596)
chr4 (144-233)||(55852053-55852144)
[»] scaffold0889 (1 HSPs)
scaffold0889 (219-266)||(3292-3339)
[»] scaffold0870 (1 HSPs)
scaffold0870 (219-266)||(3496-3543)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 31909363 - 31909097
Alignment:
Q  17 gacatcaatatcatcttaaaacccgatccattatgatggatcagattcactgtgataaatcctgattcattttaatgaatcatgttgaaatatagatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  31909363 gacatcaatatcatcttaaaacccgatccattatgatggatcagattcactgtgataaatcatgattcattctaatgaatcatgttgaaatatagatagt 31909264  T
Q  117 aatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaac 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909263 aatactcattttagagtaagttaaggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaac 31909164  T
Q  217 tatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaaat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31909163 tatcatcaatacaatagctttgtaagcttttctctctattttcatggatg-catgtttcctaacaaat 31909097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 98 - 275
Target Start/End: Original strand, 3479030 - 3479206
Alignment:
Q  98 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||  | ||||||    
T  3479030 atgttgaaatatagatagttatactcattttagagttagttagggtattagtttagtccctacataagtcacaagttgactcatttgtac--cgctcttt 3479127  T
Q  198 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgtttc 275  Q
    || | ||| |||||||||||||| ||||||||| ||  ||| |||| |||| |||||||||||||||||| ||||||||    
T  3479128 cactgttgcatcttttcaactattatcaatacagtaattttttaagtttttttctctattttcatggatgtcatgtttc 3479206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 99 - 269
Target Start/End: Complemental strand, 3785972 - 3785802
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 198  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||  || || |||     
T  3785972 tgttgaaatatagatagtgatactcattttagagttagttagggtactactatagtcactatataagtcacaagttgactcatttgta--tcactttttt 3785875  T
Q  199 att-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttctctctattttcatggatgcca 269  Q
    ||| ||||||| |||||||||| ||||||||||||  ||  ||||||| ||||||||||||||||||||||||    
T  3785874 attcttgtatcatttcaactattatcaatacaataatttcctaagcttcttctctctattttcatggatgcca 3785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 19472664 - 19472489
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19472664 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19472569  T
Q  198 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 275  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19472568 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19472489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 19543589 - 19543414
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19543589 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19543494  T
Q  198 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 275  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19543493 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 19589107 - 19589282
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagtt-agggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||| ||||||     ||||||    
T  19589107 tgttgaaatatagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgta----actcttt 19589202  T
Q  198 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 275  Q
    || ||||||||| ||||||||||  |||||| ||||  ||  ||||| ||||||||||||||||||||||||||||||||    
T  19589203 cacttttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttc 19589282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 3788646 - 3788506
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 233  Q
    ||||||||||||||| |||||||| |||||||||||||||||| ||||||||  || || ||||||| ||||||| |||||||||| ||||||||||||     
T  3788646 agttagggtactagtatagtcactgtataagtcacaagttgacccatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaataa 3788549  T
Q  234 ctttgtaagctt-ttctctctattttcatggatgccatgtttc 275  Q
     ||| ||| ||| ||||||||||||||||||||||||||||||    
T  3788548 ttttctaaacttcttctctctattttcatggatgccatgtttc 3788506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 35416228 - 35416089
Alignment:
Q  144 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 241  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| | |||  |||||| ||||||| ||||||||| ||| |||||||||| |||  ||    
T  35416228 actagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagtttttcaa 35416129  T
Q  242 gcttttctctctattttcatggatgccatgtttcctaaca 281  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  35416128 gcttttctctctatttttatggatgccatgtttcttaaca 35416089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 12062802 - 12062931
Alignment:
Q  149 tttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaatagctttgtaagctt 245  Q
    |||||| ||||||||||||||| | ||||||||||||||||    ||||||||| ||||||  |||||||| |||||||| | ||||| ||| |||||||    
T  12062802 tttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttgtattattttcaaccatcatcaagagaatagttttctaagctt 12062901  T
Q  246 ttctctctattttcatggatgccatgtttc 275  Q
    ||||||||||||||||||||||||||||||    
T  12062902 ttctctctattttcatggatgccatgtttc 12062931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 369296 - 369425
Alignment:
Q  146 tagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaagc 243  Q
    ||||||||| |||| |||||||| | | ||| || |||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||  |||||||     
T  369296 tagtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatcttttcaactatcatcaatacaatag--ttgtaagt 369393  T
Q  244 ttttctctctattttcatggatgccatgtttc 275  Q
    |||||||| |||||||||||||| ||||||||    
T  369394 ttttctctttattttcatggatgtcatgtttc 369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 4678097 - 4678146
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaa-gttgactcattt 183  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  4678097 agttagagtactagtttagttactatataagtcacaaggttgactcattt 4678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 4676152 - 4676201
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcaca-agttgactcattt 183  Q
    |||||| ||||||||||||| |||||||||||||||  ||||||||||||    
T  4676152 agttagagtactagtttagttactatataagtcacagggttgactcattt 4676201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 2576966 - 2577142
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 198  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  || || ||||    
T  2576966 tgttgaaatatagatagtgatactcattttagagttagttagggtactagtatagtcactatataagtcacaagttgactcatttgta--tcactttttc 2577063  T
Q  199 att-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttctctctattttcatggatgccatgtttc 275  Q
    ||| ||||||| |||||||||| ||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||    
T  2577064 attcttgtatcatttcaactattatcaatacaataattttctaagcttcttctctctattttcatggatgccatgtttc 2577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 274
Target Start/End: Original strand, 18446569 - 18446735
Alignment:
Q  98 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    |||||||||||||| |||| |||||||||||||||| |||||| | ||||||| |||||||||||||||||| |||||| || ||||||  ||| |||||    
T  18446569 atgttgaaatatagttagttatactcattttagagttagttagtgcactagttcagtcactatataagtcactagttgattc-tttgta--tctttcttt 18446665  T
Q  198 ca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctattttcatggatgccatgttt 274  Q
    || ||||||||| |||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  18446666 cacttttgtatcatttcaactattatcaatacaatagct--------ttttctctctattttcatggatgccatgttt 18446735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 26389160 - 26389252
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctct 191  Q
    ||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26389160 tgttgaaatataggtagttatactcattttagagttagttagtgtactagtttagtcactatataagtcacaagttgactcttttgtatctct 26389252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 1773661 - 1773530
Alignment:
Q  147 agtttagtcactatataagtcaca-agttgactcatttgtacctctctctttcattt-tgtatcttttcaactatcatcaatacaatagctttgtaagct 244  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||| || ||  | | | |||| |||| ||||| |||||||||||| |||||||||||    
T  1773661 agtttagtcactatattagtcacagagttgactcatttgtatctctttcatttttgtatatatcatttctactattatcaatacaataactttgtaagct 1773562  T
Q  245 ttt-ctctctattttcatggatgccatgtttc 275  Q
    ||| ||||||||||| ||||||| ||||||||    
T  1773561 tttactctctatttttatggatgtcatgtttc 1773530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 1715832 - 1715747
Alignment:
Q  152 agtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagcttt 237  Q
    ||||||||||||||| || ||||||||| |||||| |||||| ||||| |||| |||| |||||||||| |||||||||||| ||||    
T  1715832 agtcactatataagttactagttgactcttttgtatctctct-tttcacttttatatcatttcaactattatcaatacaataacttt 1715747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 9457682 - 9457739
Alignment:
Q  200 ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctatttt 258  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  9457682 ttttgtatcattttaactatcatcaatacaatagctttgtaag-ttttttctctatttt 9457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 26389252 - 26389317
Alignment:
Q  211 ttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 275  Q
    ||||||||| ||||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||    
T  26389252 ttcaactattatcaatacaataattttctaagttttttctctctattttcatggatgccatgtttc 26389317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 1773741 - 1773696
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggta 144  Q
    ||||||| ||||| |||| |||||||||||||||| ||||||||||    
T  1773741 tgttgaattataggtagttatactcattttagagttagttagggta 1773696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 106 - 275
Target Start/End: Original strand, 16385556 - 16385725
Alignment:
Q  106 atatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttg 204  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||| |||||    
T  16385556 atatagatagttatactcattttagagttagttagggtactagtttagtcactgtataagtcacaagttgactcatttgtac--atctctttcatttttg 16385653  T
Q  205 tatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 275  Q
    |||| |||   |||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  16385654 tatcattttccctataatcaatacaataactttgtaagctttttctttctattttcatggatgccatgtttc 16385725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 20225639 - 20225517
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 232  Q
    |||||||  ||||||||||| ||||||||||||||| | ||||||| ||||||||| ||| || |||| ||||||| |||||| ||||||||||||||||    
T  20225639 agttaggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatacaata 20225540  T
Q  233 gctttgtaagcttttctctctat 255  Q
    | |||| ||||||||||||||||    
T  20225539 gttttgcaagcttttctctctat 20225517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 275
Target Start/End: Complemental strand, 27356205 - 27356025
Alignment:
Q  96 tcatgttgaaatatagatagtaatactcatttt-agagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctc 194  Q
    ||||||| |||||||| |||| ||| ||||||| || || |||||| |||||| |||||||||| |||||| || ||||||| | || ||||  ||||||    
T  27356205 tcatgttaaaatataggtagttatagtcatttttagtgttagttagtgtactaatttagtcactgtataagacataagttgaattatatgta--tctctc 27356108  T
Q  195 tttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 275  Q
    ||||||||| ||||| |||  |||||||||||||||||| | || ||||  |||||||||| ||||||||| | |||||||||    
T  27356107 tttcatttttgtatcattttcactatcatcaatacaataaccttttaagttttttctctcttttttcatgggtaccatgtttc 27356025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 20226932 - 20226820
Alignment:
Q  172 gttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagcttttct--ctctattttcatggatgcc 268  Q
    |||||||| ||||||||| ||| ||||||| ||||||| |||||| ||||||||||||||||| |||  || |||||||  |||||| | |||| |||||    
T  20226932 gttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatccatgaatgcc 20226833  T
Q  269 atgtttcctaaca 281  Q
     ||||||||||||    
T  20226832 gtgtttcctaaca 20226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 12685086 - 12685250
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 198  Q
    ||||||||||||| |||| |||||||||||||||| |||||| |||| |||| |||||||            ||||||||| ||||||  |||||||||     
T  12685086 tgttgaaatatagttagttatactcattttagagttagttagtgtacgagttcagtcact------------agttgactcttttgta--tctctcttta 12685171  T
Q  199 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 275  Q
    | |||| |||| |||  ||||| ||||||| |||| |||| |||| |||| ||||||||||| ||||||||||||||||    
T  12685172 acttttatatcattttcactattatcaatataataactttctaagcctttcctctctatttttatggatgccatgtttc 12685250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 281
Target Start/End: Complemental strand, 21147003 - 21146819
Alignment:
Q  100 gttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcact--atataagtcacaagttgactcatttgtacctctctcttt 197  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| |   ||||||||||| |||||||||||||||||||||| |||    
T  21147003 gttgaaatatagatagttatactcattttaaagttagttagggtactagttttgtcaatgactataagtcacatgttgactcatttgtacctctct-ttt 21146905  T
Q  198 catt-ttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttcctaaca 281  Q
    |||| ||||||| ||||||||||  |||||||||||  ||| ||||  ||||||||||||||||||||||| |||||||| |||||    
T  21146904 cattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctattttcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 9664771 - 9664639
Alignment:
Q  144 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 241  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  ||    
T  9664771 actagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagtttttcaa 9664672  T
Q  242 gcttttctctctattttcatggatgccatgttt 274  Q
    |||||||||||||| | ||||||||||||||||    
T  9664671 gcttttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 33638960 - 33638784
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 198  Q
    |||||||||||||  ||| ||||| |||||||||| |||||| ||| ||||||| ||  ||||||||||| |||||||||| |||||| |||||| ||      
T  33638960 tgttgaaatatagg-agttatacttattttagagttagttagtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaa 33638862  T
Q  199 attttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 275  Q
     |||||||||| ||||| ||| ||||| ||||||  |||  |||  ||||||||||||||||||||||||||||||||    
T  33638861 cttttgtatctcttcaattattatcaagacaataattttcaaagttttttctctctattttcatggatgccatgtttc 33638784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 787289 - 787437
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 232  Q
    |||||||  ||||||||||| ||||||||||||| | | ||||||||||||||||  ||| | ||||| ||||||| |||||| ||||||||||||||||    
T  787289 agttaggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaata 787388  T
Q  233 gctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 281  Q
    | |||  || ||||||||||||| |  ||||||| ||||||||||||||    
T  787389 gttttccaaacttttctctctatatctatggatgacatgtttcctaaca 787437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 282
Target Start/End: Original strand, 3074931 - 3075083
Alignment:
Q  135 agttagggtactagtttagtcactatata--agtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaa-taca 229  Q
    |||||||  ||||||||||| ||||||||  | ||||| | ||| |||||||||| || ||| || |||| || |||| |||||||||||||||| ||||    
T  3074931 agttaggacactagtttagttactatatataaatcacatggttgtctcatttgtatctatcttttccattcttatatcatttcaactatcatcaaataca 3075030  T
Q  230 atagctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 282  Q
    |||| |||  |||||||||||||||| | |||||||||||||||| |||||||    
T  3075031 atagttttccaagcttttctctctatatccatggatgccatgttttctaacaa 3075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 4215219 - 4215395
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 198  Q
    ||||||||||||| |||| |||||||||| ||||| |||||| | ||||||| |||||||||||||||||  ||||||||| |||||| |||||| ||||    
T  4215219 tgttgaaatatagttagttatactcattt-agagttagttagtgcactagttgagtcactatataagtcattagttgactcttttgtatctctct-tttc 4215316  T
Q  199 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-ttttctctctattttcatggatgccatgtttc 275  Q
    | |||| |||| |||||||||| |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||    
T  4215317 acttttatatcatttcaactattatcaatacaataactttctaagctttttctctccattttcatggatgccatgtttc 4215395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 275
Target Start/End: Complemental strand, 18587554 - 18587369
Alignment:
Q  98 atgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtac---ctct-- 191  Q
    |||||||||||||| |||| ||||| |||||||||| ||||||||||||||||  || |||||||||||||||| ||||| ||||||||||   ||||      
T  18587554 atgttgaaatataggtagttatacttattttagagttagttagggtactagttaggttactatataagtcacaaggttgattcatttgtaccgactcttt 18587455  T
Q  192 -ctctttcat-tttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 275  Q
      |||||||| |||||||| ||| |||||||||||||| || |  ||| ||||  |||||||||||||| |||||||||||||||||    
T  18587454 catctttcatctttgtatcattttaactatcatcaatataa-atttttctaagttttttctctctatttccatggatgccatgtttc 18587369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 27172977 - 27172855
Alignment:
Q  131 agtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaataca 229  Q
    ||||||||||| |||||||||||| |||||||||||||  || ||||||||||||| || ||| || |||| ||||||| |||||||||||||||||| |    
T  27172977 agtaagttaggatactagtttagttactatataagtcattaggtgactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaataga 27172878  T
Q  230 atagctttgtaagcttttctctc 252  Q
    |||| |||  |||||||||||||    
T  27172877 atagttttccaagcttttctctc 27172855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 37498327 - 37498209
Alignment:
Q  158 tatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctat 255  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |||| |||||||||||||||||||||||   || ||||  ||||||||| ||    
T  37498327 tatataagtcacaagttgactcatttgtacccct-tcttttacttttatatcatttcaactatcatcaatacaataatcttctaagttttttctctccat 37498229  T
Q  256 tttcatggatgccatgtttc 275  Q
    ||||||||||||||| ||||    
T  37498228 tttcatggatgccatatttc 37498209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 39040685 - 39040636
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaa-gttgactcattt 183  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  39040685 agttagagtactagtttagttactatataagtcacaaggttgactcattt 39040636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 26608155 - 26608007
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaat 231  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||||    
T  26608155 agttaggatactagttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaatacaat 26608056  T
Q  232 agctttgtaagcttttctctctattttcatggatgccatgtttcctaacaa 282  Q
    |  ||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  26608055 a--tttctaagcttttctctctattttcatggatgtcatgtttcttaacaa 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 284
Target Start/End: Complemental strand, 20509288 - 20509104
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttaggg-tactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    |||| |||||||  |||| |||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||| ||  |||||||||    
T  20509288 tgttaaaatataagtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttata--tctctcttt 20509191  T
Q  198 cattttgtatcttttcaactatcatcaatacaatagctttgtaagct-tttctctctattttcatggatgccatgtttcctaacaaat 284  Q
    |||||| | | ||||||||||  ||| ||| ||||  |||  | | | |||||||||||||||||||||| ||||||||  |||||||    
T  20509190 catttt-tgtattttcaactagtatcgatataataattttcgacgttgtttctctctattttcatggatgtcatgtttctcaacaaat 20509104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 48375 - 48554
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagtta-gggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctcttt 197  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||| |||| || ||||||||||||||||||||||| || |||||| || ||| ||     
T  48375 tgttgaaatataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttc 48474  T
Q  198 cattttgtatcttttcaactatcatcaatacaatagctttgtaagctt--ttctctctattttcatggatgccatgtttc 275  Q
     ||||||||||  |||||| || ||||||||||||  ||| |||||||  ||||||||| ||||||||||| ||||||||    
T  48475 aattttgtatcccttcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttc 48554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 20868697 - 20868847
Alignment:
Q  135 agttagggtactagttt-agtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatctt-ttcaactatcatcaatacaa 230  Q
    ||||||| ||||||||| ||| ||||||||||||||| | |||||| |||||||||| ||| ||||||| ||||||  | ||||||||||||||||||||    
T  20868697 agttaggatactagttttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaatacaa 20868796  T
Q  231 tagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 281  Q
    ||| ||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  20868797 tagttttctaagcttttctctctcttttcatggatgccatgtttcccaaca 20868847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 281
Target Start/End: Original strand, 27462140 - 27462277
Alignment:
Q  146 tagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagc 243  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  ||||    
T  27462140 tagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagc 27462239  T
Q  244 ttttctctctattttcatggatgccatgtttcctaaca 281  Q
    |||||||||||| | |||||||||||||||| ||||||    
T  27462240 ttttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 283
Target Start/End: Original strand, 24595227 - 24595377
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaat 231  Q
    |||||||  ||||||||||| ||||||||||||||| | |||||||||||||||   ||| ||||||| ||||||| |||||||||||||||||||||||    
T  24595227 agttaggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaat 24595326  T
Q  232 agctttgtaagcttttctctctattttcatggatgccatgtttcctaacaaa 283  Q
    || ||| ||||||||||||||||| ||||||||||   ||||||||||||||    
T  24595327 ag-tttctaagcttttctctctatcttcatggatgttgtgtttcctaacaaa 24595377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 447217 - 447069
Alignment:
Q  136 gttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtacctctctctttcattttg-tatcttttcaactatcatcaatacaatag 233  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||  ||||||||  |||| ||||||||| ||| ||||||| ||    
T  447217 gttagggtactagtttagatactatagaagtcacaaagttgactcatttgtacctctct--ttcatttttctatcatttcaactaccataaatacaacag 447120  T
Q  234 ctttgtaagctttt--ctctctattttcatggatgccatgtttcctaacaa 282  Q
    ||||||||| ||||  ||||||| |||||||||| ||||||||| ||||||    
T  447119 ctttgtaagtttttttctctctagtttcatggataccatgtttcttaacaa 447069  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 20871335 - 20871490
Alignment:
Q  135 agttagggtactagttt-agtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaat---- 226  Q
    ||||||| ||||||||| ||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||||||        
T  20871335 agttaggatactagttttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaatacaa 20871434  T
Q  227 -acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 281  Q
     ||||||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||    
T  20871435 tacaatagttttctaagcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 275
Target Start/End: Original strand, 51308823 - 51308955
Alignment:
Q  145 ctagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaag 242  Q
    ||||| |||| ||||||||||||||| | |||||||||||||||   ||||||| ||| ||||||| |||||||||| ||||||||||||  ||| ||||    
T  51308823 ctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataa-tttataag 51308921  T
Q  243 ctttt-ctctctattttcatggatgccatgtttc 275  Q
    ||||| ||||||||||||||||||| ||||||||    
T  51308922 ctttttctctctattttcatggatgtcatgtttc 51308955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 35610819 - 35610878
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaa-gttgactcatttgtacctctct 193  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  35610819 agttagggtactagtttagttactatataagtcacaaggttgactcatttgtacatctct 35610878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 51306418 - 51306493
Alignment:
Q  200 ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 275  Q
    ||||||||| ||| |||||| ||||||||||||  ||| ||||||||| ||||||||||||||||||| ||||||||    
T  51306418 ttttgtatcattttaactattatcaatacaataa-tttctaagctttttctctctattttcatggatgtcatgtttc 51306493  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  227 acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 281  Q
    ||||||| |||  |||||||||||||||| | |||||||||||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 2202937 - 2202973
Alignment:
Q  60 gattcactgtgataaatcctgattcattttaatgaat 96  Q
    |||||||| |||||||||| |||||||||||||||||    
T  2202937 gattcactatgataaatcccgattcattttaatgaat 2202973  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 55849568 - 55849419
Alignment:
Q  135 agttagggtactagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaata 232  Q
    |||||||  ||||||| ||| ||||||||||||||| | ||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||||||||    
T  55849568 agttaggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatacaata 55849469  T
Q  233 gctttgt-aagcttttctctctattttcatggatgccatgtttcctaaca 281  Q
    | |||   |||||||||||||||| | |||||||||||||||||||||||    
T  55849468 gttttcccaagcttttctctctatatccatggatgccatgtttcctaaca 55849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 46432428 - 46432596
Alignment:
Q  99 tgttgaaatatagatagtaatactcattttagagtaagttagggtactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttc 198  Q
    |||| |||| ||| |||| |||||||||||||||| |||||| | |||| |||||||||  || ||||||| ||||||||| ||| ||  || |||||||    
T  46432428 tgttaaaatgtagttagttatactcattttagagttagttagtgcactaatttagtcaccgtaaaagtcactagttgactcttttata--tccctctttc 46432525  T
Q  199 a-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgc 267  Q
    | ||||||||| |||  ||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  46432526 acttttgtatcatttttactattatcaatacaataattttgtaagcttttcctctctattttcatggatgc 46432596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 55852144 - 55852053
Alignment:
Q  144 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 233  Q
    ||||| ||||| ||||||||| | ||| | ||||||||||||||  | ||| || |||| ||||||| ||||||||||||||||||||||||    
T  55852144 actagattagttactatataactaacatggttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatag 55852053  T

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Target: scaffold0889 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 3339 - 3292
Alignment:
Q  219 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 266  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3339 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 3543 - 3496
Alignment:
Q  219 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 266  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3543 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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