View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_64 (Length: 297)
Name: NF10121_low_64
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 282
Target Start/End: Complemental strand, 29199369 - 29199132
Alignment:
| Q |
44 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
143 |
Q |
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| T |
29199369 |
gtgaacaatttcaatatagataaatctaaagagaaaaaa-tatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatga |
29199271 |
T |
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| Q |
144 |
caaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttc |
243 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29199270 |
gaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttc |
29199171 |
T |
|
| Q |
244 |
tcattttgcagatgatttaagagctctgagtggcatttt |
282 |
Q |
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|||||||||| |||||||||||||| ||||||||||||| |
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| T |
29199170 |
tcattttgcacatgatttaagagctttgagtggcatttt |
29199132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 19768956 - 19768803
Alignment:
| Q |
112 |
tgttatagtttcttctatagcaaaagagatgacaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaa-at |
210 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19768956 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
19768857 |
T |
|
| Q |
211 |
tcaaacaaaatcagcttctcaaatttctccttctcattttgcagatgatttaag |
264 |
Q |
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| T |
19768856 |
aaaaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaag |
19768803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 25901099 - 25901225
Alignment:
| Q |
44 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
143 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| || || ||||||||||||| |||||| |||||| |
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| T |
25901099 |
gtgaacaatttcaatgtagataaatctcaagagaaaaag-tatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatga |
25901197 |
T |
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| Q |
144 |
caaagaaacaaataaaagtggaagaaga |
171 |
Q |
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| T |
25901198 |
gaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
| Q |
148 |
gaaacaaataaaagtggaagaagaaaatttacccataagaacc |
190 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
50227374 |
gaaacaaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 5478268 - 5478236
Alignment:
| Q |
229 |
tcaaatttctccttctcattttgcagatgattt |
261 |
Q |
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| T |
5478268 |
tcaaatttctccttctcattttgcacatgattt |
5478236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 6174379 - 6174412
Alignment:
| Q |
15 |
acttttgtctctgttgaaaggcgagaaaagtgaa |
48 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
6174379 |
acttttgtctctgttgaaaggtgagaaaagtgaa |
6174412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 2685044 - 2685076
Alignment:
| Q |
229 |
tcaaatttctccttctcattttgcagatgattt |
261 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
2685044 |
tcaaatttctccttctcattttgcacatgattt |
2685076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 45008469 - 45008501
Alignment:
| Q |
229 |
tcaaatttctccttctcattttgcagatgattt |
261 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
45008469 |
tcaaatttctccttctcattttgcacatgattt |
45008501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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