View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_65 (Length: 289)
Name: NF10121_low_65
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 39984833 - 39984552
Alignment:
| Q |
1 |
agaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaa |
100 |
Q |
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| T |
39984833 |
agaaggtcgaggccaagaatgcattggaaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaa |
39984734 |
T |
|
| Q |
101 |
gaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaa |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
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| T |
39984733 |
aaagaagatcgaggacaccattgaggctgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaa |
39984634 |
T |
|
| Q |
201 |
agtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
282 |
Q |
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| T |
39984633 |
ggtgtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgctgctcccggtgatgatgatg |
39984552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8018394 - 8018634
Alignment:
| Q |
1 |
agaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaa |
100 |
Q |
| |
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||||||| || || |||||||| |||||||| || || ||||||||||||||||||||||| || || ||||||| ||||||| | || ||||| |
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| T |
8018394 |
agaaggttgatgcaaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaa |
8018493 |
T |
|
| Q |
101 |
gaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaa |
200 |
Q |
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| T |
8018494 |
aaagaagattgatgatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgag |
8018593 |
T |
|
| Q |
201 |
agtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
241 |
Q |
| |
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| T |
8018594 |
agcctttgcaacccaatcattgccaagatgtatcaaggtgg |
8018634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 8101759 - 8101614
Alignment:
| Q |
96 |
gacaagaagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaat |
195 |
Q |
| |
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| T |
8101759 |
gacaagaagcagattgaggatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagc |
8101660 |
T |
|
| Q |
196 |
tggaaagtgtctgcaaccctatcattgccaagatgtaccaaggtgg |
241 |
Q |
| |
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| || | |||| ||||| |||||||| ||||||||||||||||| |
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|
| T |
8101659 |
ttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtgg |
8101614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 17706664 - 17706911
Alignment:
| Q |
4 |
aggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaa |
103 |
Q |
| |
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|||| |||||||||||||| ||||||| ||| |||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
17706664 |
aggttgaggccaagaatgctatggaaaactat----acaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagacaagaa |
17706759 |
T |
|
| Q |
104 |
gaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagt |
203 |
Q |
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| T |
17706760 |
aa---ttgaggacaccattgaggctactatccggtggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggt |
17706856 |
T |
|
| Q |
204 |
gtctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgg |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
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|
| T |
17706857 |
gtctgcaaccctatcattgccaagatgtaccaaggtggtgctggtcttggcatgg |
17706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 17649308 - 17649568
Alignment:
| Q |
14 |
caagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgag |
113 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| ||||| |
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| T |
17649308 |
caagaatgcattggaaaactat----acaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga---ttgag |
17649400 |
T |
|
| Q |
114 |
gacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaacc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | ||||| |||||| |
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| T |
17649401 |
gacaccattgaggctgctatccagtggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgtcggcaacc |
17649499 |
T |
|
| Q |
214 |
ctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||| |
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| T |
17649500 |
ctatcattgccaagatgtaccaaggtggtgcaggtcttgacatggatgccgctccaggtgatgatgatg |
17649568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 23588722 - 23588953
Alignment:
| Q |
9 |
gaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaaga |
108 |
Q |
| |
|
||||||||||||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| | |
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| T |
23588722 |
gaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaaaa |
23588821 |
T |
|
| Q |
109 |
ttgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctg |
208 |
Q |
| |
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|||| || | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | || |
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|
| T |
23588822 |
ttgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttg |
23588921 |
T |
|
| Q |
209 |
caaccctatcattgccaagatgtaccaaggtg |
240 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| |
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| T |
23588922 |
caaccctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 23597567 - 23597805
Alignment:
| Q |
2 |
gaaggtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaag |
101 |
Q |
| |
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|||||| |||||||| ||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | ||||| ||| |
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| T |
23597567 |
gaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataag |
23597666 |
T |
|
| Q |
102 |
aagaagattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaa |
201 |
Q |
| |
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||||| ||||| || | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| |
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| T |
23597667 |
aagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagg |
23597766 |
T |
|
| Q |
202 |
gtgtctgcaaccctatcattgccaagatgtaccaaggtg |
240 |
Q |
| |
|
|| | ||||||||||||||||| | |||||| ||||||| |
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|
| T |
23597767 |
gtatttgcaaccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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