View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_66 (Length: 273)

Name: NF10121_low_66
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_66
NF10121_low_66
[»] chr3 (2 HSPs)
chr3 (17-259)||(29552890-29553132)
chr3 (17-259)||(29537760-29538011)
[»] chr2 (3 HSPs)
chr2 (177-259)||(42188751-42188833)
chr2 (78-171)||(42188960-42189053)
chr2 (18-80)||(42189222-42189284)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 29553132 - 29552890
Alignment:
Q  17 gggatcaggacatctcagcatcaagcatcccggaccatcgttaattgaagtgccaatatatcctccccagcaagaaaaacagtaaggatgaccgcaagaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  29553132 gggatcaggacatctcagcatcaagcatcccggaccatcgttgattgaggtgccaatatatcctctccagcatgaaaaacagtacggatgaccgcaagaa 29553033  T
Q  117 gtagtgtgaatcttagaaggacgataatattcaaaacagataccgcaagtaagctttttagcattaggattctcataaactggcttctccaacaagccaa 216  Q
    | |||||||||||||||| ||||||||  |||||||||||| |||||||||||||||||||||| | |||||||| |||| |||||||||||||| ||||    
T  29553032 gcagtgtgaatcttagaaagacgataagcttcaaaacagatgccgcaagtaagctttttagcatcatgattctcacaaaccggcttctccaacaaaccaa 29552933  T
Q  217 cttttctccggactctatcttcgtcagcaaaccaagcttcatt 259  Q
    ||||||| |||||||  ||||| ||||||||||||||||||||    
T  29552932 cttttcttcggactccgtcttcatcagcaaaccaagcttcatt 29552890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 29538011 - 29537760
Alignment:
Q  17 gggatcaggacatctcagcatcaagcatcccggaccatcgttaattgaagtgccaatatatcctccccagcaagaaaaacagtaaggatgaccgcaagaa 116  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||    
T  29538011 gggatcaggacatctcagcatcaagcatcccagaccatcgttgattgaagtgccaatatatcctccccagcatgaagaacagtacggatgaccacaagaa 29537912  T
Q  117 gtagtgtgaatcttagaaggacgataatattcaaaacagataccgcaagtaagc---------tttttagcattaggattctcataaactggcttctcca 207  Q
    | |||||||||||||||||||||||||  |||||||||||| ||||||||||||         || ||||||| |||||||| |||| ||||||||||||    
T  29537911 gcagtgtgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagcttaggcattttgttagcatcaggattcttataagctggcttctcca 29537812  T
Q  208 acaagccaacttttctccggactctatcttcgtcagcaaaccaagcttcatt 259  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||||||    
T  29537811 acaagccaacttttcttcggactccgtcttcatcagcaaaccaagcttcatt 29537760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 42188833 - 42188751
Alignment:
Q  177 gcattaggattctcataaactggcttctccaacaagccaacttttctccggactctatcttcgtcagcaaaccaagcttcatt 259  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  42188833 gcatcaggattctcgtaaactggcttctccaacaagccaacttttcttcggactctgtcttcgtcagcaaaccaagcatcatt 42188751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 42189053 - 42188960
Alignment:
Q  78 cctccccagcaagaaaaacagtaaggatgaccgcaagaagtagtgtgaatcttagaaggacgataatattcaaaacagataccgcaagtaagct 171  Q
    ||||||||||| ||||||||||| ||||| |||||||||| | |||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  42189053 cctccccagcatgaaaaacagtacggatggccgcaagaagcattgtgaatcttagaaggacgataagcttcaaaacagatgccgcaagtaagct 42188960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 42189284 - 42189222
Alignment:
Q  18 ggatcaggacatctcagcatcaagcatcccggaccatcgttaattgaagtgccaatatatcct 80  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42189284 ggatcaggacatctcagcatcaagcatccaggaccatcgttaattgaagtgccaatatatcct 42189222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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