View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_67 (Length: 273)
Name: NF10121_low_67
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_67 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25988718 - 25988481
Alignment:
| Q |
1 |
agctagtatgtgtgtctcgaagacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgc |
100 |
Q |
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| T |
25988718 |
agctagtatgtgtgtctcgaagacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgctaaccgc |
25988619 |
T |
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| Q |
101 |
aaatagcgataagtaaggaagcacattggatgtccattatagaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25988618 |
aaatagcgataagtaaggaagcacattggatgtccattatagaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagcta |
25988519 |
T |
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| Q |
201 |
cgaacccctcaacaaaggaaactaagacaaacaaggat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
25988518 |
cgaacccctcaacaaaggaaactaagacaaacaaggat |
25988481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 25321067 - 25320975
Alignment:
| Q |
1 |
agctagtatgtgtgtctcgaagacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
93 |
Q |
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| T |
25321067 |
agctagtatgtgtgtcccgaagacatcagacttagttgaagctcaagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
25320975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26150760 - 26150668
Alignment:
| Q |
1 |
agctagtatgtgtgtctcgaagacatcagacttagttgaagctcgagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
93 |
Q |
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| T |
26150760 |
agctagtatgtgtgtcccgaagacatcagacttagttgaagctcaagttggacaatgaggcactaaactcacactccctatttatagtggcgc |
26150668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 25320973 - 25320891
Alignment:
| Q |
141 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25320973 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
25320891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 26150666 - 26150584
Alignment:
| Q |
141 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26150666 |
agaccttcttaacaaataatgtcgtgaagtggaaagttggtaaccgagaatggggagctacgaacccctcaacaaaggaaact |
26150584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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