View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_68 (Length: 270)
Name: NF10121_low_68
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_68 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 40665886 - 40665620
Alignment:
| Q |
4 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctggtggtcca |
103 |
Q |
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| T |
40665886 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctgggggtcca |
40665787 |
T |
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| Q |
104 |
gaaagcaaaattcctttaggtgctttcacaccaattgacttaaaaagttgtggatgcctcagtggaagctcgaccaactcgcgaatctgtgccatttgct |
203 |
Q |
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| T |
40665786 |
gaaagcaaaattcctttaggtgctttcgcaccaattgacttaaaaagttgtggatgcctaagtggaagctcgaccaactcgcgaatctgtgccatttgct |
40665687 |
T |
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| Q |
204 |
tcctaacaccacccacatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacagg |
270 |
Q |
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| T |
40665686 |
tcctaacaccacccacatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacagg |
40665620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 40724180 - 40724431
Alignment:
| Q |
4 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctggtggtcca |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||| |
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| T |
40724180 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaacagctcttgctattaatgtctttccagaacctgggggtcca |
40724279 |
T |
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| Q |
104 |
gaaagcaaaattcctttaggtgctttcacaccaattgacttaaaaagttgtggatgcctcagtggaagctcgaccaactcgcgaatctgtgccatttgct |
203 |
Q |
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| T |
40724280 |
tatagaaaaattcctttgggtggtttcacaccaattgacttaaaaagtt------------gtggaagctcgaccaactcacggatctgtgccatttgct |
40724367 |
T |
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| Q |
204 |
tcctaacaccacccacatcatcataaccaacttcatcaagtctttcttcatcctctcttttcac |
267 |
Q |
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| T |
40724368 |
tcctaaaaccacccacatcatcataaccgacttcatcaagcctttcttcatcctctcttttcac |
40724431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 27977293 - 27977061
Alignment:
| Q |
8 |
gacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctggtggtccagaaa |
107 |
Q |
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| T |
27977293 |
gacatgatctcaggaccattgatacagaaaaagaaagcaccagtttcatttgcaacagctcgtgcaattaaagtcttaccagatccagggggtccataca |
27977194 |
T |
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| Q |
108 |
gcaaaattcctttaggtgctttcacaccaattgacttaaaaagttgtggatgcctcagtggaagctcgaccaactcgcgaatctgtgccatttgcttcct |
207 |
Q |
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| T |
27977193 |
acaaaatcccttttggtggcttcacaccaatagacttgaataattgtggatgcctcaatggcagttccaccagttcccgaatctgagccatctgctttct |
27977094 |
T |
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| Q |
208 |
aacaccacccacatcatcataaccaacttcatc |
240 |
Q |
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| T |
27977093 |
aacaccaccaacatcatcataaccaacctcatc |
27977061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 41093134 - 41093243
Alignment:
| Q |
131 |
acaccaattgacttaaaaagttgtggatgcctcagtggaagctcgaccaactcgcgaatctgtgccatttgcttcctaacaccacccacatcatcataac |
230 |
Q |
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|||||||| ||||| || | |||||| ||||||||||| | || |||| || | |||||||||||| ||||| || |||||||| || |||||||||| |
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| T |
41093134 |
acaccaatagacttgaataattgtgggtgcctcagtggcaattcaaccagttccctaatctgtgccatctgctttctcacaccaccaacgtcatcataac |
41093233 |
T |
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| Q |
231 |
caacttcatc |
240 |
Q |
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| T |
41093234 |
caacctcatc |
41093243 |
T |
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