View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_70 (Length: 268)

Name: NF10121_low_70
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_70
NF10121_low_70
[»] chr4 (1 HSPs)
chr4 (18-252)||(25795324-25795558)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 25795558 - 25795324
Alignment:
Q  18 cacagagccaggtatttcattcatgtaacttattctataaggttctgaactatataacttaaccatacaagcttatttctttcagctgaagcttcttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795558 cacagagccaggtatttcattcatgtaacttattctataaggttctgaactatataacttaaccatacaagcttatttctttcagctgaagcttcttttg 25795459  T
Q  118 gtaacacaaaaacatgacctataatatttaataacatctcacaatcacaacacctatgattcaaacagaatttccttaacataggttgatctttatcacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795458 gtaacacaaaaacatgacctataatatttaataacatctcacaatcacaacacctatgattcaaacagaatttccttaacataggttgatctttatcacc 25795359  T
Q  218 tctcttccaaaaagaagcttcatggatgaaaaatt 252  Q
    |||||||||||||||||||||||||||||||||||    
T  25795358 tctcttccaaaaagaagcttcatggatgaaaaatt 25795324  T

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