View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_73 (Length: 255)
Name: NF10121_low_73
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_73 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 23916357 - 23916103
Alignment:
| Q |
1 |
gttttgaaattaattagggatgcaaatcccaatatctttatacatactactgtcaatgggagctacaatgccccattctttgcgacacggttcaaggagg |
100 |
Q |
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| T |
23916357 |
gttttgaaattaattagggacacaaatcccaatatctttatacatactactgtcaatgggagctacaatgccccattctttgcgacacggttcaaggagg |
23916258 |
T |
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| Q |
101 |
ctcttttcaattactctacaatgtttgatgtgcttgacatcaatgttgctcgtgaagatcaaacgaggttgatgtttgagaaagagttctgggggaggga |
200 |
Q |
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| T |
23916257 |
ctcttttcaattactctacaatgtttgatgtgcttgacatcaatgttgctcgtgaagatcaaacgaggttgatgtttgagaaagagttctgggggaggga |
23916158 |
T |
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| Q |
201 |
agtaatgaatattatagcttgtgaaggttctcagagggttgagaggccagagaca |
255 |
Q |
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| T |
23916157 |
agtaatgaatattatagcctgtgaaggttctcagagggttgagaggccagagaca |
23916103 |
T |
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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 41571499 - 41571588
Alignment:
| Q |
166 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcttgtgaaggttctcagagggttgagaggccagagaca |
255 |
Q |
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| T |
41571499 |
aggttgatgtttgaggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagaca |
41571588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 41583916 - 41584005
Alignment:
| Q |
166 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcttgtgaaggttctcagagggttgagaggccagagaca |
255 |
Q |
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| T |
41583916 |
aggttgatgtttgaggaagtgttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagaca |
41584005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 41557787 - 41557876
Alignment:
| Q |
166 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcttgtgaaggttctcagagggttgagaggccagagaca |
255 |
Q |
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| T |
41557787 |
aggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagaca |
41557876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 41590447 - 41590536
Alignment:
| Q |
166 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcttgtgaaggttctcagagggttgagaggccagagaca |
255 |
Q |
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| T |
41590447 |
aggttgatgtttgaggtagttttttgggggaatgatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagaca |
41590536 |
T |
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