View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_74 (Length: 252)
Name: NF10121_low_74
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_74 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 31475178 - 31474937
Alignment:
| Q |
13 |
caaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtgatc |
112 |
Q |
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| T |
31475178 |
caaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtgatc |
31475079 |
T |
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| Q |
113 |
atgtcttttcaggtttcgcttcctctgctactcgttgtttcacagaggttttccacggagcaacgtttcagcttctgaatttcgctgatgcagttgctga |
212 |
Q |
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| T |
31475078 |
atgtcttttcaggtttcgcttcctctgctactcgttgtttcacagaggttttccacggagcaacgtttcagcttctgaatttcgctgatgcagttgctga |
31474979 |
T |
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| Q |
213 |
tggaag--cttccatttggtgtttattcaaaatgctcgcaat |
252 |
Q |
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| T |
31474978 |
tggaagcccttccatttggtgtttattcaaaatgctcgcaat |
31474937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 40842702 - 40842497
Alignment:
| Q |
49 |
tggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtgatcatgtcttttcaggtttcgcttcctctgctactcgtt |
148 |
Q |
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| T |
40842702 |
tggatcacagcatcagaaatcgctcttaagattctatttccatttgaacaacgactctgtgatcatgtcttttcaggtttcgcctcctctgctactcgtt |
40842603 |
T |
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| Q |
149 |
gtttcacagaggttttccacggagcaacgtttcagcttctgaatttcgctgatgcagttgctgatggaag--cttccatttggtgtttattcaaaatgct |
246 |
Q |
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| T |
40842602 |
gtttcacagaggttttccacggatcaacatttcagcttctaaattttgctaatgcagttgctgatggaagcccttccatttggtgtttattcaaaatgct |
40842503 |
T |
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| Q |
247 |
cgcaat |
252 |
Q |
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| T |
40842502 |
tgcaat |
40842497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 6037010 - 6036778
Alignment:
| Q |
13 |
caaagggtgaaatatgtagataatgtgattaaaaagtggatcacagcatcagaaatctctctgaagattctatttccatttgaacaacgactctgtgatc |
112 |
Q |
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|||| |||||||||| |||||| |||||||||| ||||||| | ||||||| |||||||| || ||| ||||||||| |||||||| || ||||||| |
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| T |
6037010 |
caaaaggtgaaatatctagataccgtgattaaaagatggatcaaatcatcagatatctctctcaa-attttatttccatccgaacaacggctatgtgatc |
6036912 |
T |
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| Q |
113 |
atgtcttttcaggtttcgcttcctctgctactcgttgtttcacagaggttttccacggagcaacgtttcagcttctgaatttcgctgatgcagttgctga |
212 |
Q |
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| T |
6036911 |
acttcattttgggtttcacctcctctgctactcattttttcacagagattttccacggagcaatgtttcagcttattaattttgctgttgcagttgctga |
6036812 |
T |
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| Q |
213 |
tggaag--cttccatttggtgtttattcaaaatg |
244 |
Q |
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| T |
6036811 |
tggaagcccttcaatttggcgtttattgaaaatg |
6036778 |
T |
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