View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_76 (Length: 250)
Name: NF10121_low_76
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_76 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0436 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 26166496 - 26166257
Alignment:
| Q |
11 |
cataggaggttcatcaaagaatctttgtagatagtgttacttgtgacacgattgactcggaaaggacaacatatgtgtgggataggaaatgcgaagaaaa |
110 |
Q |
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| T |
26166496 |
cataggaggttcatcaaagaatctttgcagatagcgttacttgtgacacgattgactcggaaaggacaacatatgtgtgggataggaaatgcgaagaaaa |
26166397 |
T |
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| Q |
111 |
ttttcaacagtttaaaaagaagttgacgacgcgccggtgttaattttgtcaaaaccatgtaagttatttgtagtcataaaattttgacatggcaaatgag |
210 |
Q |
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| T |
26166396 |
ttttcaagagcttaaaaagaagttgacgacgcgccggtgttaattttatcaaaaccatgtaagttatttgtagtcataaaattttgacatggaaaatgag |
26166297 |
T |
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| Q |
211 |
ccataaaattctgctaccattatttgctttaatttattcc |
250 |
Q |
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| T |
26166296 |
ccataaaattctgctaccattatttgctttaatttgttcc |
26166257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 19869533 - 19869477
Alignment:
| Q |
54 |
tgacacgattgactcggaaaggacaa-catatgtgtgggataggaaatgcgaagaaa |
109 |
Q |
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| T |
19869533 |
tgacacaattgactcggaaagaacaagcatatgtgtggaataggcaatgcgaagaaa |
19869477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 23453191 - 23453075
Alignment:
| Q |
69 |
ggaaaggaca-acatatgtgtgggataggaaatgcgaagaaaattttcaacagtttaaaaagaagttgacgacg-cgccggtgttaattttgtcaaaacc |
166 |
Q |
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| T |
23453191 |
ggaaaggacatacatatgtctgggattggcaaatcaaagaaaaatt-caagagcttaaaaagaagttgacgacgatgccggtgttaattttgccaaagcc |
23453093 |
T |
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| Q |
167 |
atgtaagttatttgtagt |
184 |
Q |
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| T |
23453092 |
aattaggttgtttgtagt |
23453075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 12344 - 12428
Alignment:
| Q |
79 |
acatatgtgtgggataggaaatgcgaagaaaattttcaacagtttaaaaagaagttgacgacg-cgccggtgttaattttgtcaaa |
163 |
Q |
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| T |
12344 |
acatatgtgtaggataggcaatgcaaagaaaaatt-caagagcttaaaaagaagttgacaacgatgccggtgttaattttgccaaa |
12428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 18548557 - 18548613
Alignment:
| Q |
54 |
tgacacgattgactcggaaaggacaa-catatgtgtgggataggaaatgcgaagaaa |
109 |
Q |
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| T |
18548557 |
tgacacaattgactcggaaagaacaagcatatgtgtggaataggcaatgcaaagaaa |
18548613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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