View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_77 (Length: 250)
Name: NF10121_low_77
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 31786336 - 31786396
Alignment:
| Q |
42 |
catgggtggtactattatacgttgtcggacatacttgtgtttcggtaaccctttctcatag |
102 |
Q |
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| T |
31786336 |
catgggtggtactattatacgttgtcggacatacttgtgtttaggtaaccctttctcatag |
31786396 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 31786470 - 31786502
Alignment:
| Q |
176 |
caagttactattgggaaaactcgtgccttctat |
208 |
Q |
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| T |
31786470 |
caagttactattgggaaaactcgtgccttctat |
31786502 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Complemental strand, 11519982 - 11519947
Alignment:
| Q |
202 |
cttctatctatatactaataagaaaattaatgtcct |
237 |
Q |
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| T |
11519982 |
cttctatatatatactaataagaaaattaatgtcct |
11519947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 11267707 - 11267736
Alignment:
| Q |
208 |
tctatatactaataagaaaattaatgtcct |
237 |
Q |
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| T |
11267707 |
tctatatactaataagaaaattaatgtcct |
11267736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 7359015 - 7359048
Alignment:
| Q |
204 |
tctatctatatactaataagaaaattaatgtcct |
237 |
Q |
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| T |
7359015 |
tctatatatatactaataagaaaattaatgtcct |
7359048 |
T |
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