View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_83 (Length: 243)
Name: NF10121_low_83
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 8443304 - 8443529
Alignment:
| Q |
1 |
ttaggaggaatgttttggagttannnnnnngtcttttctttgtttatcttctacgtaaagttgaataacaaattcaccaattcgtgacttacacgttggt |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8443304 |
ttaggaggaatgttttggagtt-tttttttgtcttttctttgtttatcttctacgtaaagttgaataacaaattcaccaattcgtgacttacacgttggt |
8443402 |
T |
|
| Q |
101 |
tgatcgcactgtttttgctcaacttacgttttctctcttttttccatagttccttcctcaaaatacttgtcgataaatgattagaaagaccgtaatggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8443403 |
tgatcgcactgtttttgctcaacttacgttttctctc-tttttccatagttccttcctcaaaatacttgtcgagaaatgattagaaagaccgtaatggta |
8443501 |
T |
|
| Q |
201 |
ccttaaataaaatggatacgatattggc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8443502 |
ccttaaataaaatggatacgatattggc |
8443529 |
T |
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