View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10121_low_85 (Length: 241)

Name: NF10121_low_85
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10121_low_85
NF10121_low_85
[»] chr3 (1 HSPs)
chr3 (1-241)||(33690185-33690425)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 33690425 - 33690185
Alignment:
Q  1 gagagagaccatttaattttaatttcttctttaacacgtattattcctttccaaattcttgttcatgcataaattgtcttttatttaccatgtcgtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  33690425 gagagagaccatttaattttaatttcttctttaacacgtattattcctttccaatttcttgttcatgtataaattgtcttttatttaccatgtcgtaatt 33690326  T
Q  101 gtatttgttagtaaacgattgatacacacaacacacatttggctttgatctttgaagagaaaggatcttgtcggggactaagattgtgtgttcaaattag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33690325 gtatttgttagtaaacgattgatacacacaacacacatttggctttgatctttgaagagaaaggatcttgtcggggactaagattgtgtgttcaaatgag 33690226  T
Q  201 agaatagaagggaccagtgacgttagattattaactttata 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33690225 agaatagaagggaccagtgacgttagattattaactttata 33690185  T

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