View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_86 (Length: 241)
Name: NF10121_low_86
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28599096 - 28598871
Alignment:
| Q |
1 |
tattttttgttgattatatcagactcaattggaacgtcacgagaattcgctacttaggcaagcaaatgataaactaagaactgagaacatgtcaataaga |
100 |
Q |
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| T |
28599096 |
tattttttgttgattatatcagactcaattggaacgtcacgagaattcgctacttaggcaagcaaatgataaactaagagctgagaacatgtcaataaga |
28598997 |
T |
|
| Q |
101 |
gaagcaatgaggaatcccatgtgttcaaattgtggaggaccagcaattattagtgaaatttcacttgaagaacaacatctaagaattgagaatgcaagac |
200 |
Q |
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| T |
28598996 |
gaagcaatgaggaatcccatgtgttcaaattgtggaggaccagcaattattagtgaaatttcacttgaagaacaacatctaagaattgagaatgcaagac |
28598897 |
T |
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| Q |
201 |
taaaagatgaattagaccgagtttgt |
226 |
Q |
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| T |
28598896 |
taaaagatgaattagaccgagtttgt |
28598871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 12326898 - 12326724
Alignment:
| Q |
53 |
cttaggcaagcaaatgataaactaagaactgagaacatgtcaataagagaagcaatgaggaatcccatgtgttcaaattgtggaggaccagcaattatta |
152 |
Q |
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| T |
12326898 |
cttaggcaagagaatgataagcttagagctgagaatatgtctataagggatgcaatgaggaatcctatttgttccaattgtggtggtccagctatgatcg |
12326799 |
T |
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| Q |
153 |
gtgaaatttcacttgaagaacaacatctaagaattgagaatgcaagactaaaagatgaattagaccgagtttgtg |
227 |
Q |
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| T |
12326798 |
gcgagatttcactcgaggaacaacaccttcgaatcgataatgcgaggttgaaagacgagctagaccgagtttgtg |
12326724 |
T |
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