View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_88 (Length: 240)
Name: NF10121_low_88
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30274870 - 30274646
Alignment:
| Q |
1 |
tctacatattcatcttgttatacaacagtcaagaattcattctcttattgaccatgagaacaatagttggaaccaccaattgatttcgtattattttgat |
100 |
Q |
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| T |
30274870 |
tctacatattcatcttgttatacaacagtcaagaattcattctcttattgaccatgagaacaatagttggaaccaccaattgatttcgtattattttgat |
30274771 |
T |
|
| Q |
101 |
aatgttgtggcccacaatattcttaaaactcctctgattagtcaagtggctgttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtg |
200 |
Q |
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| T |
30274770 |
aatgttgtggcccacgatattcttaaaactcctctgattagtcaagtggctgttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtg |
30274671 |
T |
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| Q |
201 |
tatcggctgtgtatggcagtcattg |
225 |
Q |
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| T |
30274670 |
tatcggctgtgtatggcagtcattg |
30274646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 14151520 - 14151333
Alignment:
| Q |
17 |
gttatacaacagtcaagaattcattctcttattgaccatgagaacaatagttggaaccaccaattgatttcgtattattttgataatgttgtggcccaca |
116 |
Q |
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| T |
14151520 |
gttattcaacagtcaagaatccactctcttattgattatgagaataacagttggaaccatcagttgatctcgtattactttgataatgatgtggttcaag |
14151421 |
T |
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| Q |
117 |
atattcttaaaactcctctgattagtcaagtgg--------ctgttaatttggaaattagagaaaaatggtcgttattctgttagaag |
196 |
Q |
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| T |
14151420 |
tgattcttaaaacgcctctgtttagtaaagtggtggaggatcaattaatttggaaattagaaaaaaatggttgttattcggttagaag |
14151333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 32794857 - 32794921
Alignment:
| Q |
152 |
gttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatgg |
216 |
Q |
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| T |
32794857 |
gttaatatagaatttagagaaaaatggtcattattctgttagaagtgtgtatcgactgtgtatgg |
32794921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 32794727 - 32794797
Alignment:
| Q |
30 |
caagaattcattctcttattgaccatgagaacaatagttggaaccaccaattgatttcgtattattttgat |
100 |
Q |
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| T |
32794727 |
caagaattcattatcttgttgatcatgagagtaatagttggaatcaccaaatgatttcatattatcttgat |
32794797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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