View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_89 (Length: 240)
Name: NF10121_low_89
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_89 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 21229706 - 21229483
Alignment:
| Q |
17 |
aggaataaacgaatattttttataacaatcactagtttgtgtgcattctcctgtaatgtaaaataagaatgacgaaatattactaaaatttgattaaagt |
116 |
Q |
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| T |
21229706 |
aggaataaacggatattttttataacaatcactagtttgtgtgcattctcctgtaatgtaaaataagaatgacaaaatattactaaaattggattaaagt |
21229607 |
T |
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| Q |
117 |
ttgtgtatcaaataagcaacaaaatgagaatgagaataataactgttaatattctttatgccatcggctacaacaagacatagggaaacaaaaaggatca |
216 |
Q |
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| T |
21229606 |
ttgtgtatcaaataagcaacaaaatgagaatgagaataataactgttaatattctttacgccatcggctacaacaagacatagggaaacaaaaaggatct |
21229507 |
T |
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| Q |
217 |
aaatatatacaaacttatgagttt |
240 |
Q |
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| T |
21229506 |
aaatatatacaaacttaagagttt |
21229483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 21229052 - 21228848
Alignment:
| Q |
36 |
ttataacaatcactagtttgtgtgcattctcctgtaatgtaaaataagaatgacgaaatattactaaaatttgattaaagtttgtgtatcaaataagcaa |
135 |
Q |
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| T |
21229052 |
ttataacaatcactagtttgtgtgcattctcctgtaatgtaaaataagaatgacgaaatattactaaaattggattaaagtttgtgtatcaaataagcaa |
21228953 |
T |
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| Q |
136 |
caaaatgagaatgagaataataactgttaatattctttatgccatcggctacaacaagacatagggaaacaaaaaggatcaaaatatatacaaacttatg |
235 |
Q |
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| T |
21228952 |
caaaatgagaatgagaataataactgttaatattctttacgccatcggctacaacaagacatagggaaacaaaaaggatcaaaatatatacaaacttaag |
21228853 |
T |
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| Q |
236 |
agttt |
240 |
Q |
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||||| |
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| T |
21228852 |
agttt |
21228848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 9754507 - 9754549
Alignment:
| Q |
186 |
acaacaagacatagggaaacaaaaaggatcaaaatatatacaa |
228 |
Q |
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| T |
9754507 |
acaacaagacatagggaaaccaaaaggatcacaatataaacaa |
9754549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 16199766 - 16199798
Alignment:
| Q |
184 |
ctacaacaagacatagggaaacaaaaaggatca |
216 |
Q |
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| T |
16199766 |
ctacaacaagaaatagggaaacaaaaaggatca |
16199798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 24579377 - 24579421
Alignment:
| Q |
60 |
cattctcctgtaatgtaaaataagaatgacgaaatattactaaaa |
104 |
Q |
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| T |
24579377 |
cattctcctataatgaaaaataagaataaagaaatattactaaaa |
24579421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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