View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_9 (Length: 588)
Name: NF10121_low_9
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 24 - 574
Target Start/End: Original strand, 41942577 - 41943130
Alignment:
| Q |
24 |
tataaaaccaagcttttgaatattgacgttgatattgcgaattcattggaggtgatattgatgacaatgtatgaaggttgagagaaataaataaattgaa |
123 |
Q |
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| T |
41942577 |
tataaaaccaagcttttgaatattgacgttgatattgcgaattcattggaggtgatattgatgacaatgtatgaaggttgagagaaataaataaattgaa |
41942676 |
T |
|
| Q |
124 |
ataacataaggtcagagcttgtttgaaatgtcatttcaaagtacaacacattattattcagagtatatgaatatgaattgtgtctatttttccctgatca |
223 |
Q |
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| T |
41942677 |
ataacataaggtcagagcttgtttgaaatgtcatttcaaagtacaacacattattattcagagtatatgaatatgaattgtgtctatttttccctgatca |
41942776 |
T |
|
| Q |
224 |
gcccaaccaacaaaaacgggactccacgttctctgtctccannnnnnnnnngccctctcttctcttcttaggtaaattctctttccatctttttctgcag |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41942777 |
gcccaaccaacaaaaacgggactccacgttctctgtctccattttttttt-gccctctcttctcttcttaggtaaattctctttccatctttttctgcag |
41942875 |
T |
|
| Q |
324 |
gctctatcactgttaccagggtttctatctatgtactccatttatttt----ttactttattatcaccagtagtacatttgttcagatttaacataacag |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41942876 |
gctctatcactgttaccagggtttctatctatgtactccatttattttttttttactttattatcaccagtagtacatttgttcagatttaacataacag |
41942975 |
T |
|
| Q |
420 |
taaaaatgggggtgttgaaaacgataactaataattattatgtgattcttttcttgttatgctttggattacagtgtaacgtcaatctgtcataataata |
519 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41942976 |
taaaaatgggggtgttgaaaacgataactaataattattatgtgattcttttcttgttatgctttgtattacagtgtaacgtcaatctgtcataataata |
41943075 |
T |
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| Q |
520 |
atattcacaatcagtccacaaacctgtcagcttcacttataacactagatgtgat |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41943076 |
atattcacaatcagtccacaaacctgtcagcttcacttataacactagatgtgat |
41943130 |
T |
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