View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10121_low_96 (Length: 234)
Name: NF10121_low_96
Description: NF10121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10121_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 774871 - 775021
Alignment:
| Q |
62 |
caccatacattgtttgctttcttagcttttgttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaactaatttga |
161 |
Q |
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| T |
774871 |
caccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaactaatttga |
774970 |
T |
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| Q |
162 |
tgttttaaccctcatcagaaattctattgaaatagtagcagatatgatttt |
212 |
Q |
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| T |
774971 |
tgttttaaccctcatcagaaattctattgaaatagtagcagatatgatttt |
775021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 17461468 - 17461284
Alignment:
| Q |
13 |
gatggacatcagcaagcgattttgatccccaagcaacccacttaagcgtcaccatacattgtttgctttcttagcttttgttgagagttccctgtaaaac |
112 |
Q |
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| T |
17461468 |
gatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccaccatacattgtttgctttcttagctttttttgagagttccctgtaaaag |
17461369 |
T |
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| Q |
113 |
attgaagtcaacaatgtgaaagaaaagtgaagtgcataaactaatttgatgttttaaccctcatcagaaattctattgaaatagtagcagatatgatt |
210 |
Q |
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| T |
17461368 |
gttgaaatcaacaatgtgaaagaaaagtg-------------aatttgatgttttaaccctcatcagaaattctactgaaatagtagcatatatgatt |
17461284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 17455556 - 17455698
Alignment:
| Q |
13 |
gatggacatcagcaagcgattttgatccccaagcaacccacttaagcgtcaccatacattgtttgctttcttagcttttgttgagagttccctgtaaaac |
112 |
Q |
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| T |
17455556 |
gatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaac |
17455655 |
T |
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| Q |
113 |
attgaagtcaacaatgtgaaagaaaagtgaagtgcataaacta |
155 |
Q |
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| T |
17455656 |
attgaagtcgaaaatgtgaaagaaaagtgaagtgcataaacta |
17455698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 17804823 - 17804903
Alignment:
| Q |
25 |
caagcgattttgatccccaagcaacccacttaagcgtcaccatacattgtttgctttcttagcttttgttgagagttccct |
105 |
Q |
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| T |
17804823 |
caagcggttttggtccccgagcaagccacttaagcgccaccacatgttatttgctttctgagcttttttagacagttccct |
17804903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 52142896 - 52142789
Alignment:
| Q |
18 |
acatcagcaagcgattttgatccccaagcaacccacttaagcgtcaccatacattgtttgctttcttagcttttgttgagagttccctgtaaaacattga |
117 |
Q |
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| T |
52142896 |
acattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttgctttcttagctttttttgagagttccctgtgaaagattga |
52142797 |
T |
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| Q |
118 |
agtcaaca |
125 |
Q |
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| T |
52142796 |
agtcaaca |
52142789 |
T |
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