View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10122_high_3 (Length: 358)

Name: NF10122_high_3
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10122_high_3
NF10122_high_3
[»] chr5 (25 HSPs)
chr5 (163-348)||(38334382-38334567)
chr5 (163-332)||(666899-667068)
chr5 (163-332)||(27885714-27885883)
chr5 (163-339)||(11917721-11917897)
chr5 (163-340)||(8409251-8409428)
chr5 (167-340)||(701482-701655)
chr5 (163-340)||(15068741-15068918)
chr5 (163-340)||(30002263-30002440)
chr5 (164-249)||(2226451-2226536)
chr5 (157-256)||(332842-332941)
chr5 (164-251)||(12680643-12680730)
chr5 (164-253)||(10174481-10174569)
chr5 (168-256)||(9161403-9161491)
chr5 (164-256)||(12165511-12165603)
chr5 (168-256)||(36103183-36103271)
chr5 (167-256)||(38434108-38434197)
chr5 (164-256)||(36176457-36176549)
chr5 (164-256)||(36176688-36176780)
chr5 (164-242)||(32520793-32520871)
chr5 (168-238)||(42545822-42545892)
chr5 (196-256)||(30265393-30265453)
chr5 (168-256)||(23781134-23781215)
chr5 (168-256)||(23868087-23868168)
chr5 (32-68)||(6036548-6036584)
chr5 (164-251)||(23623469-23623556)
[»] chr3 (15 HSPs)
chr3 (163-339)||(35401801-35401977)
chr3 (164-339)||(10369527-10369702)
chr3 (163-340)||(4669224-4669401)
chr3 (158-319)||(34794860-34795021)
chr3 (163-325)||(51149299-51149461)
chr3 (163-325)||(33361243-33361405)
chr3 (164-266)||(6003961-6004063)
chr3 (164-251)||(48032709-48032796)
chr3 (157-242)||(32880738-32880823)
chr3 (196-245)||(43030846-43030895)
chr3 (170-242)||(35531736-35531808)
chr3 (157-221)||(50562152-50562216)
chr3 (196-256)||(21586447-21586506)
chr3 (168-242)||(27641794-27641868)
chr3 (157-232)||(39098370-39098440)
[»] chr2 (14 HSPs)
chr2 (163-332)||(36412928-36413097)
chr2 (163-348)||(20420679-20420870)
chr2 (163-325)||(9811670-9811832)
chr2 (163-325)||(16578925-16579082)
chr2 (157-256)||(44035732-44035831)
chr2 (157-248)||(42785091-42785182)
chr2 (164-266)||(44979343-44979445)
chr2 (164-256)||(25297824-25297916)
chr2 (168-242)||(11376318-11376392)
chr2 (164-262)||(18360217-18360315)
chr2 (37-88)||(20420955-20421006)
chr2 (188-256)||(17916450-17916518)
chr2 (180-242)||(19936709-19936771)
chr2 (181-251)||(44085956-44086026)
[»] chr7 (25 HSPs)
chr7 (157-325)||(47204082-47204250)
chr7 (163-325)||(47069958-47070120)
chr7 (163-325)||(10672109-10672271)
chr7 (163-340)||(12117875-12118052)
chr7 (163-332)||(8768297-8768461)
chr7 (163-325)||(11206009-11206161)
chr7 (163-279)||(3211773-3211889)
chr7 (164-256)||(43429591-43429683)
chr7 (164-242)||(42910249-42910327)
chr7 (164-262)||(18672788-18672886)
chr7 (164-256)||(13852729-13852821)
chr7 (164-256)||(47903642-47903734)
chr7 (164-237)||(32824028-32824101)
chr7 (168-256)||(27054300-27054388)
chr7 (164-256)||(31876214-31876301)
chr7 (168-245)||(5933047-5933129)
chr7 (164-242)||(36921124-36921202)
chr7 (164-256)||(24360863-24360953)
chr7 (164-237)||(10069995-10070068)
chr7 (164-237)||(22366882-22366955)
chr7 (164-251)||(40849325-40849412)
chr7 (168-237)||(31982243-31982312)
chr7 (192-251)||(524425-524484)
chr7 (169-237)||(36509078-36509142)
chr7 (197-251)||(30079153-30079207)
[»] chr1 (17 HSPs)
chr1 (157-325)||(8211570-8211738)
chr1 (157-325)||(5154958-5155126)
chr1 (157-340)||(20494014-20494193)
chr1 (163-319)||(29707713-29707864)
chr1 (167-256)||(33910347-33910436)
chr1 (167-256)||(39256206-39256295)
chr1 (157-256)||(33474864-33474963)
chr1 (159-237)||(29390121-29390199)
chr1 (157-243)||(32954510-32954596)
chr1 (167-242)||(45692228-45692303)
chr1 (168-256)||(1160605-1160692)
chr1 (164-248)||(24910621-24910705)
chr1 (164-256)||(16529059-16529151)
chr1 (164-234)||(51251998-51252068)
chr1 (190-242)||(6722416-6722468)
chr1 (204-256)||(11899462-11899514)
chr1 (164-225)||(44918980-44919041)
[»] chr6 (10 HSPs)
chr6 (163-325)||(12270836-12270998)
chr6 (163-348)||(5866649-5866830)
chr6 (169-256)||(10390613-10390700)
chr6 (160-256)||(33550746-33550842)
chr6 (164-266)||(35039506-35039608)
chr6 (157-256)||(15860150-15860249)
chr6 (157-256)||(10591261-10591360)
chr6 (197-256)||(13801578-13801637)
chr6 (164-256)||(25137567-25137658)
chr6 (169-256)||(10493964-10494051)
[»] chr4 (23 HSPs)
chr4 (163-325)||(50570589-50570751)
chr4 (163-348)||(29643338-29643523)
chr4 (163-325)||(42558013-42558175)
chr4 (163-277)||(29639973-29640087)
chr4 (163-258)||(36078681-36078776)
chr4 (164-266)||(40899652-40899754)
chr4 (170-256)||(52345130-52345216)
chr4 (168-256)||(5261427-5261515)
chr4 (164-256)||(48996502-48996594)
chr4 (157-246)||(6333754-6333843)
chr4 (164-244)||(26477761-26477841)
chr4 (164-256)||(30193548-30193640)
chr4 (157-237)||(52345283-52345363)
chr4 (168-247)||(32137124-32137203)
chr4 (165-221)||(10219131-10219187)
chr4 (160-256)||(40806389-40806480)
chr4 (180-256)||(51395253-51395329)
chr4 (169-237)||(8176185-8176253)
chr4 (192-237)||(31301832-31301877)
chr4 (304-344)||(29639932-29639972)
chr4 (205-256)||(43630956-43631007)
chr4 (204-256)||(23937130-23937182)
chr4 (223-251)||(48653492-48653520)
[»] scaffold0308 (1 HSPs)
scaffold0308 (163-339)||(5484-5660)
[»] chr8 (13 HSPs)
chr8 (163-332)||(5802523-5802689)
chr8 (163-319)||(3006204-3006360)
chr8 (164-256)||(44673147-44673239)
chr8 (164-242)||(14549660-14549738)
chr8 (164-256)||(30392502-30392594)
chr8 (165-242)||(3682350-3682427)
chr8 (164-256)||(36827360-36827452)
chr8 (157-251)||(10661576-10661669)
chr8 (164-256)||(6200504-6200596)
chr8 (182-242)||(36909934-36909994)
chr8 (164-241)||(18169599-18169676)
chr8 (164-241)||(18633165-18633242)
chr8 (204-262)||(33069009-33069067)
[»] scaffold0059 (2 HSPs)
scaffold0059 (164-256)||(69103-69195)
scaffold0059 (164-256)||(77209-77301)
[»] scaffold0013 (1 HSPs)
scaffold0013 (164-256)||(106458-106550)
[»] scaffold0029 (2 HSPs)
scaffold0029 (164-256)||(40142-40234)
scaffold0029 (164-256)||(47338-47430)
[»] scaffold0131 (1 HSPs)
scaffold0131 (32-70)||(11916-11954)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 38334382 - 38334567
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  38334382 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaactaaaccaaaccgcaaaaatactcaat 38334481  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctattcatttcat 348  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38334482 gttattaaactaagtaattactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctattcatttcat 38334567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 666899 - 667068
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  666899 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 666998  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  666999 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 667068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 27885714 - 27885883
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27885714 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 27885813  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27885814 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 27885883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 163 - 339
Target Start/End: Complemental strand, 11917897 - 11917721
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11917897 gttcggatgacttttagactaaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 11917798  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11917797 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctat 11917721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 8409428 - 8409251
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8409428 gttcggatgacttttagactgaatcgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 8409329  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  8409328 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagtccaacactatccagctatt 8409251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 701655 - 701482
Alignment:
Q  167 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatgtta 266  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  701655 ggatgacttttagactaaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaatgtta 701556  T
Q  267 ttaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  701555 ttaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctatt 701482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 15068918 - 15068741
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  15068918 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaaaaatactcaat 15068819  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  15068818 gttattaaactaagtaagtactgtactagcccaataccaaagtgagcccaagcccaagcccaacactatccagctatt 15068741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 30002440 - 30002263
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30002440 gttcggatgatttttagactgaaccgcgcggttcggttcggtttgcggtttacatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 30002341  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30002340 gttattaaactaagtaagtattgtactagcccaataccaaagtgaacccaagtccaagcccaacactatccagctatt 30002263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 2226451 - 2226536
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgc 249  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2226451 ttcggatgacttttgcacttaaccgcgcggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgc 2226536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 332842 - 332941
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||| |||||||  |||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||| ||||    
T  332842 cacttggttcggacgacttttgcactgaaccgcgcagttcggtttggtttgcggtttgcatctcagcatccgaaccaaaccaaactaaaccgcaagaata 332941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 12680643 - 12680730
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    ||||||||||||||  | |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12680643 ttcggatgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa 12680730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 10174569 - 10174481
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaa 253  Q
    ||||||||||||||  |||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10174569 ttcggatgacttttgcactgaaccgcgcggtttg-ttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaa 10174481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 9161491 - 9161403
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||    
T  9161491 gatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaaccaaacccaaccgcaagaata 9161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 12165511 - 12165603
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||||||||||  ||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  12165511 ttcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacgaaaccaaaccgcaagaata 12165603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 36103183 - 36103271
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  |||||||||||||||||| || ||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  36103183 gatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 36103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 38434197 - 38434108
Alignment:
Q  167 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  38434197 ggatgacttttgcactgaaccgtgaggttcggtttgatttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 38434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 36176457 - 36176549
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||| ||||||  ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  36176457 ttcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaata 36176549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 36176688 - 36176780
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||| ||||||  ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  36176688 ttcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaata 36176780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 32520793 - 32520871
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||    
T  32520793 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcgatctgcatctcagcaaccgaaccaaaccaaacc 32520871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 42545892 - 42545822
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacca 238  Q
    ||||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  42545892 gatgacttttgcactaaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 30265393 - 30265453
Alignment:
Q  196 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||    
T  30265393 cggttcggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaatcgcaagaata 30265453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 23781215 - 23781134
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  ||||||| |||||||||||||||||||||       ||||||||||  ||||||| |||||||||||||||||||||    
T  23781215 gatgacttttgcactgaactgcgcggttcggttcggtttgc-------atctcagcaactgaaccaagccaaaccaaaccgcaaaaata 23781134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 23868168 - 23868087
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  ||||||| |||||||||||||||||||||       ||||||||||  ||||||| |||||||||||||||||||||    
T  23868168 gatgacttttgcactgaactgcgcggttcggttcggtttgc-------atctcagcaactgaaccaagccaaaccaaaccgcaaaaata 23868087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 6036548 - 6036584
Alignment:
Q  32 cgagccacgaagctttgaaaaatgagcggaggtgtgg 68  Q
    |||||||||||||||||||||||||||||||||||||    
T  6036548 cgagccacgaagctttgaaaaatgagcggaggtgtgg 6036584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 23623556 - 23623469
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    ||||||| ||||||  ||| ||||||  |||| |||| |||||||||||| ||| | |  || |||||||||||||||||||||||||    
T  23623556 ttcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaaccaaaccgcaa 23623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 35401801 - 35401977
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35401801 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 35401900  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 339  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35401901 gttattaaactaagtaagtattgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctat 35401977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 10369702 - 10369527
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10369702 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaatg 10369603  T
Q  264 ttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10369602 ttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctat 10369527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 4669224 - 4669401
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  4669224 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaatactcaat 4669323  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  4669324 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaaccctatccagctatt 4669401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 158 - 319
Target Start/End: Complemental strand, 34795021 - 34794860
Alignment:
Q  158 acttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatac 257  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34795021 acttggttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatac 34794922  T
Q  258 tcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaa 319  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34794921 tcaatgttattaaactaagtaagtactgtaccagcccaataccaaagtgaacccaagcccaa 34794860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 163 - 325
Target Start/End: Original strand, 51149299 - 51149461
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  51149299 gttcggatgacttttagactgaaccgcgcggttcggttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaaccgcaaaaatactcaat 51149398  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51149399 gttattaaactaagtaagtactctactagcccaataccaaagtgaacccaagcccaagcccaa 51149461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 33361405 - 33361243
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  33361405 gttcggatgacttttagactgaaccgcgcggtttagttcagtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaaaaatactcaat 33361306  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361305 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 33361243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 6003961 - 6004063
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 263  Q
    ||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| | ||||    
T  6003961 ttcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaagaataatgaatg 6004060  T
Q  264 tta 266  Q
    |||    
T  6004061 tta 6004063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 48032709 - 48032796
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  48032709 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaa 48032796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 32880823 - 32880738
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    |||||||||||||||||||||  |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  32880823 cacttggttcggatgacttttgcactgaaccgcgcagttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaacc 32880738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 43030895 - 43030846
Alignment:
Q  196 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaa 245  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43030895 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 43030846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 35531736 - 35531808
Alignment:
Q  170 tgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||||  |||||||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||    
T  35531736 tgacttttgcactgaaccgcacggttcagttcgatttgcagtttgcatctcagcaaccgaaccaaaccaaacc 35531808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 50562152 - 50562216
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctca 221  Q
    |||||||||||||||||||||| |||||| || ||| ||||||||| |||||| |||||||||||    
T  50562152 cacttggttcggatgacttttacactgaatcgtgcgattcggttcgatttgcgatttgcatctca 50562216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 21586447 - 21586506
Alignment:
Q  196 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||| ||||    
T  21586447 cggttcggtttgcagtttgcatctcagcaaccgaaccaaacc-aaccaaatcgcaagaata 21586506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 27641794 - 27641868
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||||||  ||||||||||| |||| | || |||||||||||||||||||||| |   ||||||||||||||    
T  27641794 gatgacttttgcactgaaccgcgtggtttgatttggtttgcggtttgcatctcagccactaaaccaaaccaaacc 27641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 39098440 - 39098370
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaacc 232  Q
    |||||||||||||||||||||  ||||||||     || ||||||| |||| ||||||||||||||||| ||||||    
T  39098440 cacttggttcggatgacttttgcactgaacc-----gtgcggttcgatttgtggtttgcatctcagcaaccgaacc 39098370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 36412928 - 36413097
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412928 gttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 36413027  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36413028 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 36413097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 163 - 348
Target Start/End: Complemental strand, 20420870 - 20420679
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20420870 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 20420771  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagc------ccaacactatcgagctattcatttcat 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||| |||||||||||||||    
T  20420770 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaagcccaacactatccagctattcatttcat 20420679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 9811832 - 9811670
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9811832 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 9811733  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9811732 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 9811670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 16579082 - 16578925
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||     ||||||||||||||    
T  16579082 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca-----caaaaatactcaat 16578988  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16578987 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 16578925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 44035831 - 44035732
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44035831 cacttggttcggatgacttttgcactgaaccgcgcggttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 44035732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 42785091 - 42785182
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccg 248  Q
    |||||||||||||||||||||  | |||||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  42785091 cacttggttcggatgacttttgcattgaaccacgcggttcggtttggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaaccg 42785182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 44979343 - 44979445
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 263  Q
    ||||||||| ||||  |||||||||||||||| | || |||||||||||||||||||||| | ||||||||||||||||||||||||| |||| | ||||    
T  44979343 ttcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaagaataatgaatg 44979442  T
Q  264 tta 266  Q
    |||    
T  44979443 tta 44979445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 25297824 - 25297916
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||    |||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  25297824 ttcggatgacttttgctttgaaccgcacggttcggtttggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 25297916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 11376392 - 11376318
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  11376392 gatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaaccaaacc 11376318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 18360315 - 18360217
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||| |||||||||  | |||||| |||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  18360315 ttcgaatgacttttgcattgaaccacgcggttcggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatcaat 18360217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 20421006 - 20420955
Alignment:
Q  37 cacgaagctttgaaaaatgagcggaggtgtgggtgttgtatctaggggtgtt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20421006 cacgaagctttgaaaaatgagcggaggtgtgggtgttgtatctaggggtgtt 20420955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 17916450 - 17916518
Alignment:
Q  188 gcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  17916450 gcgcggttcggtttggtttgtggtttgcatctcagcaaccgagccaaaccaaaccaaaccgcaagaata 17916518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 19936709 - 19936771
Alignment:
Q  180 actgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||    
T  19936709 actgaactgcgcggttcggttcggtttgcagtttgtatctcagcaaccaaaccaaaccaaacc 19936771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 44086026 - 44085956
Alignment:
Q  181 ctgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    |||||||||  |||| |||| |||||| ||||| ||| ||| ||| |||||||||||||||||||||||||    
T  44086026 ctgaaccgcatggtttggtttggtttgtggttttcatttcaccaaccgaaccaaaccaaaccaaaccgcaa 44085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 47204082 - 47204250
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47204082 cacttggttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47204181  T
Q  257 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47204182 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 47204250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 47070120 - 47069958
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47070120 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 47070021  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47070020 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 47069958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 10672271 - 10672109
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10672271 gttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 10672172  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672171 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 10672109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 163 - 340
Target Start/End: Complemental strand, 12118052 - 12117875
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  12118052 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaatactcaat 12117953  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  12117952 gttattaaactaagtaagtactgtactagaccaataccaaagtgaacccaagcccaagcccaacactatccagctatt 12117875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 8768297 - 8768461
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||     |||||||||||||||||||||||||    
T  8768297 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgtggtttgcatctcagcaaccgaacc-----aaaccaaaccgcaaaaatactcaat 8768391  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8768392 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 8768461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 163 - 325
Target Start/End: Original strand, 11206009 - 11206161
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||    
T  11206009 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc----------aaaccgcaaaaatactcaat 11206098  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11206099 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 11206161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 3211773 - 3211889
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3211773 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 3211872  T
Q  263 gttattaaactaagtaa 279  Q
    |||||||||||||||||    
T  3211873 gttattaaactaagtaa 3211889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 43429683 - 43429591
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  43429683 ttcggatgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 43429591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 42910249 - 42910327
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42910249 ttcggatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaacc 42910327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 18672788 - 18672886
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||| ||||  | || ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  18672788 ttcggatgatttttgcattggaccgcgcagttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaataataatcaat 18672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 13852821 - 13852729
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||||||||| | |||||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  13852821 ttcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaaccaaaccaaaccaaactgcaagaata 13852729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 47903734 - 47903642
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| ||||    
T  47903734 ttcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatctcagcaaccgaaccaaaacaacccaaaccacaagaata 47903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 32824101 - 32824028
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    |||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||    
T  32824101 ttcggatggcttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaacc 32824028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 27054300 - 27054388
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  ||| ||||| ||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  27054300 gatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaaccaaaccaaaccaaaccacaagaata 27054388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 31876214 - 31876301
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  | ||||||| |||||||| || ||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  31876214 ttcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaata 31876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 5933129 - 5933047
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttc-----ggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaa 245  Q
    ||||||||||  ||||||||||||||||||||||     ||||||||||||| |||||||||| |||||||||||||||||||    
T  5933129 gatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaa 5933047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 36921124 - 36921202
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||| ||||||  | |||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  36921124 ttcggattacttttgcattgaaccacgcggttcggtttggtttgcagtttgcatctcagcaaccgaaccaaaccaaacc 36921202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 24360863 - 24360953
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  || ||||| | | |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  24360863 ttcggatgacttttgcacagaaccacacagttcggttcggtt--cggtttgcgtctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 24360953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 10070068 - 10069995
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    ||||||||||||||  |||||||||| | |||| |||||||||||| ||||||||||||||| | |||||||||    
T  10070068 ttcggatgacttttgcactgaaccgcacagttcagttcggtttgcgatttgcatctcagcaaccaaaccaaacc 10069995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 22366955 - 22366882
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    ||||||||||||||  ||| ||||| ||| || ||||||||||||||||||||||| ||||| | |||||||||    
T  22366955 ttcggatgacttttgcactaaaccgtgcgatttggttcggtttgcggtttgcatcttagcaaccaaaccaaacc 22366882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 40849412 - 40849325
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    ||||||| ||||||  ||| ||||||  |||| |||| |||||||||||| ||| | | ||| |||||||||||||||||||||||||    
T  40849412 ttcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 40849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 31982243 - 31982312
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    ||||||||||  ||||||| |||||||| |||| | |||||||||||||||| ||||| | |||||||||    
T  31982243 gatgacttttgcactgaactgcgcggtttggtttgatttgcggtttgcatcttagcaaccaaaccaaacc 31982312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 524425 - 524484
Alignment:
Q  192 ggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    |||| |||| |||||||||||| ||| | | ||| |||||||||||||||||||||||||    
T  524425 ggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 36509142 - 36509078
Alignment:
Q  169 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    |||||||||  | ||||||| ||||||||||| |||||||||||||    |||||||||||||||||||    
T  36509142 atgacttttgcattgaaccgtgcggttcggtttggtttgcggtttg----tcagcaatcgaaccaaacc 36509078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 30079153 - 30079207
Alignment:
Q  197 ggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    |||| |||||||||||| ||  | ||||| |||||||||||||||||||||||||    
T  30079153 ggtttggtttgcggttttcagtttagcaaccgaaccaaaccaaaccaaaccgcaa 30079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 8211738 - 8211570
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8211738 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8211639  T
Q  257 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8211638 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaaacccaa 8211570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 5154958 - 5155126
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5154958 cacttggttcggatgacttttagactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5155057  T
Q  257 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5155058 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaaacccaa 5155126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 157 - 340
Target Start/End: Complemental strand, 20494193 - 20494014
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  20494193 cacttggttcggatgacttttagactgaaccgcgcggttcggttcgatttgctgtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 20494094  T
Q  257 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 340  Q
    ||||||||||||||||||||||     || ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  20494093 ctcaatgttattaaactaagtat----tgcactagcccaataccaaagtgaactcaagcccaagcccaacactatccagctatt 20494014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 163 - 319
Target Start/End: Original strand, 29707713 - 29707864
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29707713 gttcggatgacttttagactgaaccgc-----acggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 29707807  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaa 319  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29707808 gttattaaactaagtaagtaatgtactagcccaataccaaagtgaacccaagcccaa 29707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 33910347 - 33910436
Alignment:
Q  167 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  33910347 ggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagtaatcaaaccaaaccaaaccaaaccgcaagaata 33910436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 39256206 - 39256295
Alignment:
Q  167 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  39256206 ggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 39256295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 33474963 - 33474864
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||| |||| ||||    
T  33474963 cacttagttcggatgacttttgcactgaaccgcgcggttcggttcggtttgtgatttgcatctcatcaaccgaaccaaaccaaaccaaactgcaagaata 33474864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 29390199 - 29390121
Alignment:
Q  159 cttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  29390199 cttggttcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaatcaaatcaaacc 29390121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 32954596 - 32954510
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacca 243  Q
    |||||||||||||||||||||  ||| |||||| |||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  32954596 cacttggttcggatgacttttgcactaaaccgcacggttccgttcggttcgcggtttgcatctcagcaaccgaaccaaaccaaacca 32954510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 45692303 - 45692228
Alignment:
Q  167 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  45692303 ggatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaacaaacc 45692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 1160605 - 1160692
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  |||||||||| || ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  1160605 gatgacttttgcactgaaccgcacgattcggttcgatttgcggtt-gcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 1160692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 24910621 - 24910705
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccg 248  Q
    ||||||||||||||  | ||||||| || ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24910621 ttcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccg 24910705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 16529059 - 16529151
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||| |||||  ||||||| |||| ||||||||  || |||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  16529059 ttcggatggcttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaaccaaaccaaaccaaaccaaaccgcaagaata 16529151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 51251998 - 51252068
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaa 234  Q
    ||||||||||||||  | |||||||||| |||||||| |||||||||||||||||||||||| | ||||||    
T  51251998 ttcggatgacttttgcaatgaaccgcgcagttcggtttggtttgcggtttgcatctcagcaaccaaaccaa 51252068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 6722416 - 6722468
Alignment:
Q  190 gcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  6722416 gcggttcgattcgatttgcggtttgcatctcagcaaccgaaccaaaccaaacc 6722468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 11899514 - 11899462
Alignment:
Q  204 tttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  11899514 tttgcggtttgcatctcagcaaccgaatcaaaccaaaccaaaccgcaagaata 11899462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 44919041 - 44918980
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaa 225  Q
    ||||||| ||||||  ||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  44919041 ttcggataacttttgcactgaactgcgcggtttggtttggtttgcggtttgcatctctgcaa 44918980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 12270998 - 12270836
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12270998 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 12270899  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12270898 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 12270836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 5866649 - 5866830
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5866649 gttcggatgtcttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 5866748  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctattcatttcat 348  Q
    ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5866749 gttattaaac----taagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccaggtattcatttcat 5866830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 10390613 - 10390700
Alignment:
Q  169 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10390613 atgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 10390700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 33550842 - 33550746
Alignment:
Q  160 ttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||| ||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  33550842 ttggttcagattacttttgcactgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaagaata 33550746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 35039506 - 35039608
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 263  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| | ||||    
T  35039506 ttcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaagaataatgaatg 35039605  T
Q  264 tta 266  Q
    |||    
T  35039606 tta 35039608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 15860249 - 15860150
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||| ||||||| |||| ||| |||||||||||||||||||| |||| ||||    
T  15860249 cacttggttcggatgacttttacactgaaccgtgcggttcgatttggtttgcagtttgcacctcaccaaccgaaccaaaccaaaccaaactgcaagaata 15860150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 10591360 - 10591261
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||| |||||||||||||||  |||||||||||||||||| ||||||||||||||||| ||||| |||  ||||||||||||||  |||||||| ||||    
T  10591360 cacttagttcggatgacttttgcactgaaccgcgcggttcgattcggtttgcggtttgcgtctcaacaacagaaccaaaccaaactgaaccgcaagaata 10591261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 13801578 - 13801637
Alignment:
Q  197 ggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||    
T  13801578 ggttcggtttgcggtttgcatctcatcaactgaaccaaaccaaaccaaaccgcaagaata 13801637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 25137658 - 25137567
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  |||||||||||||||| |||| || ||||||| ||||||||| ||| ||||||||||  ||||||||| ||| ||||    
T  25137658 ttcggatgacttttgcactgaaccgcgcggtttggtttgg-ttgcggtatgcatctcatcaaccgaaccaaactgaaccaaaccacaataata 25137567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 10493964 - 10494051
Alignment:
Q  169 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||  ||||||||| |  ||||| |||||||||| ||||||||||||||||   |||||||||||||||||| |||| ||||    
T  10493964 atgacttttgcactgaaccgtgtagttcgattcggtttgcagtttgcatctcagcaactaaaccaaaccaaaccaaactgcaagaata 10494051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 163 - 325
Target Start/End: Original strand, 50570589 - 50570751
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50570589 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 50570688  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50570689 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 50570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 163 - 348
Target Start/End: Original strand, 29643338 - 29643523
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29643338 gttcggatgacttttaaactgaaccgcgcggttcggttcggtttgtggcttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 29643437  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctattcatttcat 348  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  29643438 gttattaaactaagtaagtactgtactagtccaataccaaagtgaacccaagcccaaacccaacactatccagctattcatttcat 29643523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 42558175 - 42558013
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42558175 gttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 42558076  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 325  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  42558075 gttattaaactaagtaagtactgtactaacccaataccaaagtgaacccaaacccaagcccaa 42558013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 29640087 - 29639973
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29640087 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 29639988  T
Q  263 gttattaaactaagt 277  Q
    |||||||||||||||    
T  29639987 gttattaaactaagt 29639973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 36078776 - 36078681
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatact 258  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36078776 gttcggatgacttttagactgaaccgcgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatact 36078681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 40899652 - 40899754
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 263  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||    
T  40899652 ttcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatg 40899751  T
Q  264 tta 266  Q
    |||    
T  40899752 tta 40899754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 52345216 - 52345130
Alignment:
Q  170 tgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  52345216 tgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 52345130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 5261427 - 5261515
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||    
T  5261427 gatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagaaatcgaaccaaatcaaaccaaactgcaagaata 5261515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 48996594 - 48996502
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  | ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  48996594 ttcggatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 48996502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 6333843 - 6333754
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaac 246  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||    
T  6333843 cacttggttcagatgacttttacactgaaccgcgcgattcggttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaac 6333754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 26477761 - 26477841
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaa 244  Q
    ||||||||||||||  ||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26477761 ttcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaa 26477841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 30193548 - 30193640
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||| |||||||||  | ||||||| |||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  30193548 ttcgtatgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccataccgcaagaata 30193640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 52345363 - 52345283
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    |||||||||||||||||||||  |||||| |||  |||||||||||||||| ||||||||||||||||| |||||||||||    
T  52345363 cacttggttcggatgacttttgtactgaatcgcatggttcggttcggtttgtggtttgcatctcagcaaccgaaccaaacc 52345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 32137203 - 32137124
Alignment:
Q  168 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaacc 247  Q
    ||||||||||  | ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  32137203 gatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaacc 32137124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 10219187 - 10219131
Alignment:
Q  165 tcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctca 221  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10219187 tcggatgacttttacactgaaccgcgcggttcggtttggtttgcggtttgcatctca 10219131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 40806389 - 40806480
Alignment:
Q  160 ttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||||||| |||||||||| ||||| | ||     ||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  40806389 ttggttcggatgacttttacactgaaccgcacggtttgatt-----tgcggtttgcatctcagcaactgaaccaaaccaaaccaaaccgcaagaata 40806480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 51395329 - 51395253
Alignment:
Q  180 actgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||||||||||| ||||||||| |||| |||||| ||||| || | |||||||||||||||||||||||||| ||||    
T  51395329 actgaaccgcgcagttcggttcagtttacggtttacatctgagaagtcgaaccaaaccaaaccaaaccgcaagaata 51395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 8176185 - 8176253
Alignment:
Q  169 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    |||||||||  |||||||||||  |||||||||| |||||||||||||||||||||| | |||||||||    
T  8176185 atgacttttgcactgaaccgcgtcgttcggttcgatttgcggtttgcatctcagcaaccaaaccaaacc 8176253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 31301877 - 31301832
Alignment:
Q  192 ggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 237  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  31301877 ggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaacc 31301832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 29639972 - 29639932
Alignment:
Q  304 gtgaacccaagcccaagcccaacactatcgagctattcatt 344  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  29639972 gtgaacccaagcccaagcccaacactatccagctattcatt 29639932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 43631007 - 43630956
Alignment:
Q  205 ttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||| ||||    
T  43631007 ttgcggttgacatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 43630956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 23937130 - 23937182
Alignment:
Q  204 tttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||| ||||||||||||| |||  |||||||||||||| ||||||||| ||||    
T  23937130 tttgtggtttgcatctcaacaactgaaccaaaccaaactaaaccgcaagaata 23937182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 48653492 - 48653520
Alignment:
Q  223 caatcgaaccaaaccaaaccaaaccgcaa 251  Q
    |||||||||||||||||||||||||||||    
T  48653492 caatcgaaccaaaccaaaccaaaccgcaa 48653520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 163 - 339
Target Start/End: Original strand, 5484 - 5660
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5484 gttcgaatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 5583  T
Q  263 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 339  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  5584 gttattaaactaagtaagtaccgtactagcccaataccaaagtgaacccaagcccaagctcaacactatccagctat 5660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 163 - 332
Target Start/End: Original strand, 5802523 - 5802689
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  5802523 gttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaatactcaat 5802617  T
Q  263 gttattaa--actaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 332  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5802618 gttattaaacactaagtaagtactgtactagcccaataccaaagtgaacccaaacccaagcccaacactatc 5802689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 163 - 319
Target Start/End: Original strand, 3006204 - 3006360
Alignment:
Q  163 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcg-----aaccaaaccaaaccaaaccgcaaaaatac 257  Q
    |||||||| |||||||||||||||||||||||     |||||||||||||||||||||||||| ||     |||||||||||||||||||||||||||||    
T  3006204 gttcggattacttttagactgaaccgcgcggt-----tcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccaaaccgcaaaaatac 3006298  T
Q  258 tcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3006299 tcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgagcccaagcccaa 3006360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 44673239 - 44673147
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  44673239 ttcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaactgcaagaata 44673147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 14549738 - 14549660
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14549738 ttcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaaccaaaccaaacc 14549660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 30392594 - 30392502
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  |||||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  30392594 ttcggatgacttttttactgaaccgcgcggtttggttcagtttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 30392502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 3682427 - 3682350
Alignment:
Q  165 tcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    |||||||||||||  |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||    
T  3682427 tcggatgacttttccactgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaacc 3682350  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 36827360 - 36827452
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    |||| |||||||||  |||||||| | ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  36827360 ttcgaatgacttttgcactgaaccacacggtttggttcggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaagaata 36827452  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 10661669 - 10661576
Alignment:
Q  157 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 251  Q
    |||||||||| ||||||||||  |||||||| ||||||| |||| |||||||| ||||||||||||||| | ||| |||||||||||||||||||    
T  10661669 cacttggttcagatgacttttgcactgaaccacgcggtttggtttggtttgcg-tttgcatctcagcaaccaaactaaaccaaaccaaaccgcaa 10661576  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 6200504 - 6200596
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  |||||| || ||||||  |||||||||  ||||||||||| ||||| | ||||||||||||||||||||||| ||||    
T  6200504 ttcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttgcatcttagcaaccaaaccaaaccaaaccaaaccgcaagaata 6200596  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 36909934 - 36909994
Alignment:
Q  182 tgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 242  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  36909934 tgaactgcgcggttcggttcggtttgcggtttgcatctcaggaaccgaaccataccaaacc 36909994  T

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Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 18169599 - 18169676
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaac 241  Q
    ||||||| ||||||  ||||||||||| ||||||||| ||||||||||||||||||| |||  ||||||||| |||||    
T  18169599 ttcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaac 18169676  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 18633165 - 18633242
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaac 241  Q
    ||||||| ||||||  ||||||||||| ||||||||| ||||||||||||||||||| |||  ||||||||| |||||    
T  18633165 ttcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaac 18633242  T

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Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 33069067 - 33069009
Alignment:
Q  204 tttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 262  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| |||||    
T  33069067 tttgcggtttgcatcttagcaaccgaaccaaacgaaaccaaaccacaaaaataatcaat 33069009  T

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Target: scaffold0059 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 69103 - 69195
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||    
T  69103 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaata 69195  T

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Target: scaffold0059; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 77209 - 77301
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||    
T  77209 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaata 77301  T

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Target: scaffold0013 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 106550 - 106458
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| ||||    
T  106550 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaacccgcaagaata 106458  T

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Target: scaffold0029 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 40142 - 40234
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||||||||||| || |||||| |||||| ||||| ||||||| ||| ||||||||||||||||||||| ||| ||||    
T  40142 ttcggatgacttttgcactgaaccgcgtggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaagaata 40234  T

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Target: scaffold0029; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 47338 - 47430
Alignment:
Q  164 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 256  Q
    ||||||||||||||  ||||||||||  || |||||| |||||| ||||| ||||||| ||| ||||||||||||||||||||| ||| ||||    
T  47338 ttcggatgacttttgcactgaaccgcatggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaagaata 47430  T

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Target: scaffold0131 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 11954 - 11916
Alignment:
Q  32 cgagccacgaagctttgaaaaatgagcggaggtgtgggt 70  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  11954 cgagtcacgaagctttgaaaaatgagcggaggtgtgggt 11916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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