View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10122_high_7 (Length: 227)
Name: NF10122_high_7
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10122_high_7 |
 | |
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| [»] scaffold0830 (1 HSPs) |
| |
|
| [»] chr8 (18 HSPs) |
| |
|
| [»] scaffold0070 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0830 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 4647 - 4873
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| |
|
|
| T |
4647 |
agctatgggattatgctaatggaaatcttcaccagaagaaagccaacagatgatatgtttgttgcagaactaagtttgaaatcatggatcaatgaatcat |
4746 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||| | ||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||| ||| ||||| ||||||||||| || |
|
|
| T |
4747 |
tgcctaattcaattatgaaggtcttggattcaaatttagtccaacaaattgaggaagaaactgatgatatattgattcatatgtcatctatttttggttt |
4846 |
T |
|
| Q |
201 |
agctctgaattgttgcaaatattcacc |
227 |
Q |
| |
|
|||| ||||||||||| |||||||||| |
|
|
| T |
4847 |
agctttgaattgttgcgaatattcacc |
4873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 18)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 25569828 - 25569602
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||||| |
|
|
| T |
25569828 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatatttgttgcagaactaagtttgaagacatggatcagtgaatcat |
25569729 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||| ||||||||||| || |
|
|
| T |
25569728 |
tgccaaattcaattatggaggtcttggattcaaatttagtccaacaaattggggaacaaattgatgacatattgatttacatgtcatctatttttggttt |
25569629 |
T |
|
| Q |
201 |
agctctgaattgttgcaaatattcacc |
227 |
Q |
| |
|
||| |||||||||||| || ||||||| |
|
|
| T |
25569628 |
agccctgaattgttgcgaagattcacc |
25569602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23257858 - 23257635
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
23257858 |
agctatgggattatgctaatggaaatcttcacaaggagaaagccaacagatgatatgttcgttgaagaactaagtttgaagacatggatcgatggatcat |
23257759 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||||||||||| |||||||| || |||||||||| ||| |||||||||| ||||||||||| || |
|
|
| T |
23257758 |
tgcctaattcaattatggaggtcttagattctaatttagtccaacaatttggggaacaacttgatgatattttgactcacatgtcatctatttttggttt |
23257659 |
T |
|
| Q |
201 |
agctctgaattgttgcaaatattc |
224 |
Q |
| |
|
||| ||| |||||||| ||||||| |
|
|
| T |
23257658 |
agccctgcattgttgcgaatattc |
23257635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25685569 - 25685355
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
25685569 |
agctatgggattatgctaatggaaattttcacaagaagaaagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcattggatcat |
25685470 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| ||| | ||||||||||||||||||| || |||||| | |||||||||||||||| |||||||||| ||||||||| | || |
|
|
| T |
25685469 |
tgcctaattcaattatggaggtcctggattcaaatttagtccaactaactggggacacaattgatgatatattgactcacatgtcatctatttttagttt |
25685370 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
25685369 |
agcattgaattgttg |
25685355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25452913 - 25452699
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||| |||||||| |
|
|
| T |
25452913 |
agctatgggatcatgttaatggaaatctttacaagaagaaagccaacagatgatatgtttgttccagaactaagcctgaagacatggatcagtggatcat |
25452814 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||| ||||||||||| || |
|
|
| T |
25452813 |
ttcctaattcaattatggagatcttggattcaaatttagtccaacaaattggggaacaaattgatgacatattgacttacatgtcatctatttttggttt |
25452714 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
25452713 |
agccctgaattgttg |
25452699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 24875559 - 24875773
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
24875559 |
agctatgggattatgctaatggaaatcttcacaagaaaaaggccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtggatcat |
24875658 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| ||| | |||||||||||||||||| || |||||| ||||||||||||||| | |||||||||| ||||||||| | || |
|
|
| T |
24875659 |
tgcctaattcaattatggaggtcatggattcaaatttagtccaaataactggggaccaaattgatgatatatcgactcacatgtcatctatttttagttt |
24875758 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
24875759 |
agccctgagttgttg |
24875773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25340921 - 25340707
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||| |||||||| |
|
|
| T |
25340921 |
agctatgggatcatgttaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgctgaactaaacttgaagacatggatcagtggatcat |
25340822 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
| ||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| | ||||||| ||||||||||| || |
|
|
| T |
25340821 |
ttcctaattcaattatggaggtcttggattcaaatttagtccaacaaattggagaacaaattgatgacatattgaattacatgtcatctatttttggttt |
25340722 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
25340721 |
agccctgaaatgttg |
25340707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25695282 - 25695068
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| | |||||| |
|
|
| T |
25695282 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtcgatcat |
25695183 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| |||| |||||||| ||| | |||||||||||||||||| || |||||| |||||||| |||||||| |||||||||| ||||||||| | || |
|
|
| T |
25695182 |
tgcctaattccattatggaggtcatggattcaaatttagtccaaataactggggaccaaattgataatatattgactcacatgtcatctatttttagttt |
25695083 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
25695082 |
agctctaagttgttg |
25695068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 25646962 - 25646750
Alignment:
| Q |
3 |
ctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcattg |
102 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||| |||| |||||||||| | |||||||| |
|
|
| T |
25646962 |
ctatgggattatgctaatggaaatctttacaaggagaaagccaatagatgatatgtttgttgcagaactaagcttgaagacatggatcagtagatcattg |
25646863 |
T |
|
| Q |
103 |
cctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggattag |
202 |
Q |
| |
|
||| ||||||||||||| ||| | |||||||||||||||||| || |||||| ||||||||||||||||| |||||||||| ||||||||| | |||| |
|
|
| T |
25646862 |
cctaattcaattatggaggtcatggattcaaatttagtccaaagaactggggaccaaattgatgatatattgactcacatgtcatctatttttagtttag |
25646763 |
T |
|
| Q |
203 |
ctctgaattgttg |
215 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
25646762 |
ccctgaattgttg |
25646750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 24913210 - 24913424
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
24913210 |
agctatgggattatgctaatggaaatcttcacaagaataatgccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtggatcat |
24913309 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| ||| | |||||||||||||||||| || | |||| |||||||| |||||||| |||||||||| ||||||||| | || |
|
|
| T |
24913310 |
tgcctaattcaattatggaggtcatggattcaaatttagtccaaataacttgggaccaaattgattatatattgactcacatgtcatctatttttagttt |
24913409 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
24913410 |
agccctgatttgttg |
24913424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25715115 - 25714901
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||||| || ||||| |
|
|
| T |
25715115 |
agctatgggattatgctaatggaaatcttaacaagaaaaaagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtgaatcat |
25715016 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| ||| | |||||||||||||||||| || |||||| ||||||||||||||| | |||||||||| ||||||||| | || |
|
|
| T |
25715015 |
tgcctaattcaattatggaggtcatggattcaaatttagtccaaataactggggaccaaattgatgatatatcgactcacatgtcatctatttttagttt |
25714916 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
25714915 |
agccctgagttgttg |
25714901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 25800208 - 25799997
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
25800208 |
agctatgggatcatgttaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtggatcat |
25800109 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||| ||||| ||| | |||||||||||||||||| || |||||| ||||||||||||||||| |||||||||| | ||||||| | || |
|
|
| T |
25800108 |
tgcctaattcaatcatggaggtcatggattcaaatttagtccaaataactggggaccaaattgatgatatattgactcacatgtcatatatttttagttt |
25800009 |
T |
|
| Q |
201 |
agctctgaattg |
212 |
Q |
| |
|
||| ||||||| |
|
|
| T |
25800008 |
agcattgaattg |
25799997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 22901278 - 22901504
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||| ||||| |||||||||| || ||||| |
|
|
| T |
22901278 |
agctatgggattatgctaatggaaatctttacaagaagaaagccaacagatgatatgtttgtagaagacctaactttgaagacatggatcagtgaatcat |
22901377 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||| | ||||||||||||| ||||| ||||||||||| |||||| | |||||| ||||||||||| || |
|
|
| T |
22901378 |
tgcctaattcaattatggatgtcttggattctaggttagtccaacaaaatggggggaaaattgatgacatattgagttgcatgtcatctatttttggttt |
22901477 |
T |
|
| Q |
201 |
agctctgaattgttgcaaatattcacc |
227 |
Q |
| |
|
||| ||||||||||||||| ||||||| |
|
|
| T |
22901478 |
agccctgaattgttgcaaagattcacc |
22901504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 25475197 - 25474995
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
25475197 |
agctatgggattatgctaatggaaatcttaacaagaaaaaagccaacagatgatatgtttgttgcagaactaaaattgaagacatggatcaatggatcat |
25475098 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| |||||||||| || ||| | |||||||||||||||||| ||| ||||||| |||||||||| |||||| || |||| | ||||||||||| || |
|
|
| T |
25475097 |
tgcctaattcaattatagaagtcatggattcaaatttagtccaaaaaaatggggaacaaattgatgacatattgactaacataacatctatttttggttt |
25474998 |
T |
|
| Q |
201 |
agc |
203 |
Q |
| |
|
||| |
|
|
| T |
25474997 |
agc |
25474995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25604559 - 25604345
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| |||| |||| |||||||||| | |||||| |
|
|
| T |
25604559 |
agctatggaattatgctaatggaaatctttacaaagagaaagccaatagatgatatgtttgttgcagaactaagcttgaagacatggatcagtcgatcat |
25604460 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| |||| |||||||| ||| | |||||||||||||||||| || |||||| ||||||||||||||||| |||||||||| ||||||||| | || |
|
|
| T |
25604459 |
tgcctaattccattatggaggtcatggattcaaatttagtccaaataactggggacgaaattgatgatatattgactcacatgtcatctatttttagttt |
25604360 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
25604359 |
agctctgagttgttg |
25604345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 25322578 - 25322364
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| | ||||| |
|
|
| T |
25322578 |
agctatgggataatgataatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtcaatcat |
25322479 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| |||| |||||||| ||| | |||||||||||||||||| || |||||| ||||||||||| ||| | ||||||| || ||||||||| | || |
|
|
| T |
25322478 |
tgcctaattccattatggaggtcatggattcaaatttagtccaaataactggggaccaaattgatgatctatcgactcacatatcatctatttttagttt |
25322379 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
25322378 |
agccctgagttgttg |
25322364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 25490122 - 25489928
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||| |||| |||| |||||||||| | |||||| |
|
|
| T |
25490122 |
agctatgggattatgctaatggaaatctttacaaggagaaaaccaatagatgatatgtttgttgcagaactaagcttgaagacatggatcagtcgatcat |
25490023 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctattttt |
195 |
Q |
| |
|
||||| |||| |||||||| ||| | |||||||||||||||||| || |||||| |||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
25490022 |
tgcctaattccattatggaggtcatggattcaaatttagtccaaataactggggaccaaattgataatatattgactcacatgtcatctattttt |
25489928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 195
Target Start/End: Complemental strand, 25385937 - 25385785
Alignment:
| Q |
43 |
ccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcattgcctcattcaattatggacgtcttagattcaaatttagtcc |
142 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |||||||||| | ||||||||||| |||| |||||||| ||| | |||||||||||||||| |
|
|
| T |
25385937 |
ccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtcgatcattgcctaattccattatggaggtcatggattcaaatttagtcc |
25385838 |
T |
|
| Q |
143 |
aacaaattggggaaaaaattgatgatatattgcctcacatgtcctctattttt |
195 |
Q |
| |
|
|| || |||||| |||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
25385837 |
aaataactggggaccaaattgattatatattgactcacatgtcatctattttt |
25385785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 29429348 - 29429240
Alignment:
| Q |
107 |
attcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggattagctct |
206 |
Q |
| |
|
||||||||||||| |||||||| || |||| ||||||||| | ||||||| |||||||||| |||||| | ||||| | ||||||||||| |||| || |
|
|
| T |
29429348 |
attcaattatggaggtcttagactctaattgagtccaacagaatggggaacaaattgatgacatattgacatacatgccttctatttttggtttagtcct |
29429249 |
T |
|
| Q |
207 |
gaattgttg |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
29429248 |
gaattgttg |
29429240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 17197 - 17411
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
17197 |
agctatgggattatgctaatggaaatctttacaagaagaaagccaacagatgatatgtttgttgcagaactaagcttgaagacatggatcagtggatcat |
17296 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgatgatatattgcctcacatgtcctctatttttggatt |
200 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||||||| || |||||| ||||||||||||||| | |||||||||| ||||||||| | || |
|
|
| T |
17297 |
tgcctaattcaattatggagctcttggattcaaatttagtccaaataactggggaccaaattgatgatatatcgactcacatgtcatctatttttagttt |
17396 |
T |
|
| Q |
201 |
agctctgaattgttg |
215 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
17397 |
agccctgagttgttg |
17411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 10323789 - 10323625
Alignment:
| Q |
1 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgttgcagaaataagtttgataacatggatcaatggatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
10323789 |
agctatgggattatgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgctgcagaactaagcttgaagacatggatcagtggatcat |
10323690 |
T |
|
| Q |
101 |
tgcctcattcaattatggacgtcttagattcaaatttagtccaacaaattggggaaaaaattgat |
165 |
Q |
| |
|
||||| || |||||||||| ||||| ||||| ||||||||||||| || |||||| |||||||| |
|
|
| T |
10323689 |
tgcctaatgcaattatggaggtcttggattctaatttagtccaactaaatggggatgaaattgat |
10323625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 5079767 - 5079719
Alignment:
| Q |
13 |
atgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttg |
61 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
5079767 |
atgctaatggaaatcttcacaggaaagaagccaacagatgaaatgtttg |
5079719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 16886787 - 16886836
Alignment:
| Q |
13 |
atgctaatggaaatcttcacaagaagaaagccaacagatgatatgtttgt |
62 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
16886787 |
atgctaatggaaatcttcacaggaaagaagccaacaaatgaaatgtttgt |
16886836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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