View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10122_low_1 (Length: 992)
Name: NF10122_low_1
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10122_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 505 - 988
Target Start/End: Complemental strand, 42322734 - 42322244
Alignment:
| Q |
505 |
atttgattatactatattcgtttctatatttgaatgacttttattttaatgtaaaatcaaaaatcttatatttaggtaacaatatgtttttgtttttgga |
604 |
Q |
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| T |
42322734 |
atttcattatactatattcgtttctatatttgaatgacgtttatttttatgtaaaatcaaaaatttcatatttaggtaacaatatgtttttgtttttgga |
42322635 |
T |
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| Q |
605 |
aacaactattaaatccttatatttatgacaatttgttcgagttcacaatacctatcaacaatattgccaactggtgtttaattacgatttcattcgactt |
704 |
Q |
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| T |
42322634 |
aacaactattaaatccttatatttatgacaatttgttcgagttcacaatacctatcaacaatattgccaactagtgtttaattacgatctcattcgactt |
42322535 |
T |
|
| Q |
705 |
aactataattgtgaatcgccttagttgtcttcgtcgtcacaattgatttctacaacttcttaaaacagttt---------tgaccacatgtactataatt |
795 |
Q |
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| T |
42322534 |
aactataattgtgaatcgccttagttgtcttcgtcgtcacaattgatttctacaacttcttaaaacaattttgagcaacatgaccacatgtactataatt |
42322435 |
T |
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| Q |
796 |
tttacacaaacatgcaagccctcacattgtgctttcaaccacatcccacaaaaatttgtgtgtccaaccacagtttcattcatataaagttcaactcaaa |
895 |
Q |
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| T |
42322434 |
tttacacaaacatgcaagccctcacattgtgctttcaaccacatcccacaaaaatt--tgtgtccaaccacagtttcattcatataaagttcaactcaaa |
42322337 |
T |
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| Q |
896 |
cccgaacatattttccattgaatctctccatagctttgacgtcaactgtaactaaattttcaatagtcgtagcaagggggaagaacacactct |
988 |
Q |
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| T |
42322336 |
tccgaacatattttctattaaatctctccatagctttgacgtcaactgtaactaaattttcaatagccgcagcaagggggaagaacacactct |
42322244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 42323139 - 42322840
Alignment:
| Q |
13 |
agcacagacccgcaagaagaagagcgagccatggtgttgtgagatgtattctgcaccgtcttgttgtgattcaaagatgaagatgtgttgattatgaatg |
112 |
Q |
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| T |
42323139 |
agcacagacccgcaagaagaagagcgagccatggtgttgtgagatgtatactgcaccgtcttgttgtgattcaaagatgaagatgtgttgat-------- |
42323048 |
T |
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| Q |
113 |
atgatgcgagtgttcctctgcgctttttatagtgtttagtcttaatttcgaacatgtcattggtgattacgtggaccaattgaaaattgagtcaggacgg |
212 |
Q |
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| T |
42323047 |
--gatgcgagtgttcctctgcgctttttatagtgtttagtcttaatttcgaacatgtcattggtgattacgtggaccaattgaaaattgagtcaggacgg |
42322950 |
T |
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| Q |
213 |
ttttagccaatgggattgcctcttgtgtgtgggagcatgtcacttccctttgtttgtaagtcgctcgctctactgcgatcttatttatttgttgattttt |
312 |
Q |
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| T |
42322949 |
ttttagccaatgggattgcctcttgtgtgtgggagcatgtcacttccct----ttgtaag----tcgctctactgcaatcttatttatttgttgattttt |
42322858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 42321527 - 42321746
Alignment:
| Q |
20 |
acccgcaagaagaagagcgagccatggtgttgtgagatgtattctgcaccgtcttgttgtgattcaaagatgaagatgtgttgattatgaatgatgatgc |
119 |
Q |
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| T |
42321527 |
acccgcaagaagaagagtgagccatggtgttgtgagatgtattcgtcaccgtcttgt---gattcaaagatggagtagtattgac-------gatgatgc |
42321616 |
T |
|
| Q |
120 |
gagtgttcctctgcgctttttatagtgtttagt-------cttaatttcgaacatgtcattggtgattacgtggaccaattgaaaattgagtcaggacgg |
212 |
Q |
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| T |
42321617 |
gagtgttactctgcgcattttatagtgtttactgtttactcttaatttcgaacaagtcattgatgattacgtgaaccaattgtaaatcgagttaggacga |
42321716 |
T |
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| Q |
213 |
ttttagccaatgggattgcctcttgtgtgtg |
243 |
Q |
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| T |
42321717 |
ttttagccaatggga-tgcctcttgtgtgtg |
42321746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 42321915 - 42322019
Alignment:
| Q |
433 |
gttgcaatacataaattactaattatattattggcttcaaattatggtcggcaaatgtctaaattcacggtcatttgattatactatattcgtttctata |
532 |
Q |
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| T |
42321915 |
gttgcaatacataaattagtaattatgtt---ggcttcaaattatggttggcaaatgtctaaattcacggtcatttgattatactactttcatttctata |
42322011 |
T |
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| Q |
533 |
tttgaatg |
540 |
Q |
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|||||||| |
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| T |
42322012 |
tttgaatg |
42322019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 479
Target Start/End: Complemental strand, 42322780 - 42322735
Alignment:
| Q |
433 |
gttgcaatacataaattactaattatattattggcttcaaattatgg |
479 |
Q |
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| T |
42322780 |
gttgcaatacataaattagtaattata-tattggcttcaaattatgg |
42322735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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