View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10122_low_13 (Length: 294)

Name: NF10122_low_13
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10122_low_13
NF10122_low_13
[»] chr3 (1 HSPs)
chr3 (66-283)||(47704571-47704818)
[»] chr6 (2 HSPs)
chr6 (20-64)||(14092567-14092611)
chr6 (20-63)||(14088035-14088078)
[»] chr8 (2 HSPs)
chr8 (20-63)||(24881280-24881323)
chr8 (20-51)||(24876795-24876826)
[»] chr7 (3 HSPs)
chr7 (20-63)||(32213825-32213868)
chr7 (20-64)||(9950087-9950131)
chr7 (20-63)||(9955077-9955120)
[»] chr2 (2 HSPs)
chr2 (20-63)||(33681560-33681603)
chr2 (20-63)||(33698617-33698660)
[»] chr1 (2 HSPs)
chr1 (20-63)||(46461277-46461320)
chr1 (20-60)||(46453879-46453919)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 66 - 283
Target Start/End: Original strand, 47704571 - 47704818
Alignment:
Q  66 agtgtaatatcttagtgactattttgtatgtcataataagtgggggaactttcttaaatgatagaagacaaatatggtattcgtacacatcaagttaatg 165  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47704571 agtgtaatatcttagtgactattttctatgtcataataagtgggggaactttcttaaatgatagaagataaatatggtattcgtacacatcaagttaatg 47704670  T
Q  166 acaaactg---------------------aatcataagttaaaaataaaatgaatatggccttattcctag---------ccatgtattgtttgaatata 235  Q
    ||||||||                     ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  47704671 acaaactgcatacatccggtaaaacctgcaatcataagttaaaaataaaatgaatatggccttattcctagccatgagccccatgtattgtttgaatata 47704770  T
Q  236 gcgacctgtatatgcacacgcattgcatttaagtgtatcaatgttcat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47704771 gcgacctgtatatgcacacgcattgcatttaagtgtatcaatgttcat 47704818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 14092567 - 14092611
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcacag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14092567 tattccatatttagtaaacactaaatatttcacttattctcacag 14092611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 14088035 - 14088078
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14088035 tattccatatttagtaaacactaaatatttcacttattctcaca 14088078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 24881280 - 24881323
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24881280 tattccatatttagtaaacactaaatatttcacttattctcaca 24881323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 24876795 - 24876826
Alignment:
Q  20 tattccatatttagtaaacactaaatatttca 51  Q
    ||||||||||||||||||||||||||||||||    
T  24876795 tattccatatttagtaaacactaaatatttca 24876826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 32213825 - 32213868
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32213825 tattccatatttagtaaacactaaatatttcacttattctcaca 32213868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 9950131 - 9950087
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcacag 64  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  9950131 tattccatatttaataaacactaaatatttcacttattctcacag 9950087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 9955120 - 9955077
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  9955120 tattccatatttactaaacactaaatatttcacttattctcaca 9955077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 33681603 - 33681560
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33681603 tattccatatttagtaaacactaaatatttcacttattctcaca 33681560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 33698660 - 33698617
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33698660 tattccatatttagtaaacactaaatatttcacttattctcaca 33698617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 46461320 - 46461277
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctcaca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46461320 tattccatatttagtaaacactaaatatttcacttattctcaca 46461277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 46453919 - 46453879
Alignment:
Q  20 tattccatatttagtaaacactaaatatttcacttattctc 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46453919 tattccatatttagtaaacactaaatatttcacttattctc 46453879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University