View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10122_low_15 (Length: 266)

Name: NF10122_low_15
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10122_low_15
NF10122_low_15
[»] chr3 (13 HSPs)
chr3 (1-82)||(50810722-50810803)
chr3 (1-82)||(50865061-50865142)
chr3 (1-75)||(50809575-50809649)
chr3 (1-75)||(50866213-50866287)
chr3 (1-76)||(54110100-54110175)
chr3 (1-82)||(53622871-53622952)
chr3 (1-72)||(44602859-44602930)
chr3 (1-82)||(11224671-11224752)
chr3 (5-82)||(24487139-24487216)
chr3 (15-76)||(21074109-21074170)
chr3 (1-82)||(13621139-13621220)
chr3 (1-82)||(49379921-49380002)
chr3 (1-75)||(34819099-34819174)
[»] chr8 (8 HSPs)
chr8 (1-82)||(28420062-28420143)
chr8 (1-75)||(28418960-28419034)
chr8 (1-82)||(31845611-31845692)
chr8 (1-82)||(42871035-42871116)
chr8 (1-76)||(43202325-43202397)
chr8 (18-73)||(9854711-9854766)
chr8 (5-75)||(42098791-42098861)
chr8 (1-75)||(6398331-6398405)
[»] chr6 (3 HSPs)
chr6 (1-82)||(232321-232402)
chr6 (1-82)||(233457-233538)
chr6 (1-82)||(11723006-11723087)
[»] chr7 (10 HSPs)
chr7 (1-82)||(30334458-30334540)
chr7 (1-73)||(39981544-39981616)
chr7 (1-82)||(47059332-47059413)
chr7 (17-82)||(16756089-16756154)
chr7 (29-82)||(48312260-48312313)
chr7 (2-82)||(43441565-43441645)
chr7 (1-82)||(47060291-47060372)
chr7 (1-75)||(22537784-22537858)
chr7 (1-71)||(41328449-41328518)
chr7 (29-82)||(28325290-28325343)
[»] chr4 (18 HSPs)
chr4 (1-82)||(1829969-1830050)
chr4 (1-76)||(36845635-36845710)
chr4 (23-82)||(38555115-38555174)
chr4 (13-71)||(6349376-6349434)
chr4 (1-79)||(40723447-40723525)
chr4 (1-82)||(54485433-54485514)
chr4 (1-72)||(45535274-45535345)
chr4 (1-82)||(1520030-1520111)
chr4 (5-82)||(26630009-26630086)
chr4 (2-79)||(34326949-34327026)
chr4 (1-72)||(52138607-52138678)
chr4 (1-72)||(23103824-23103895)
chr4 (1-55)||(54484487-54484541)
chr4 (1-82)||(27850752-27850832)
chr4 (4-55)||(42810021-42810072)
chr4 (3-52)||(22069485-22069534)
chr4 (23-76)||(44498687-44498740)
chr4 (1-73)||(26496125-26496197)
[»] chr2 (7 HSPs)
chr2 (1-82)||(4920875-4920956)
chr2 (14-76)||(43034308-43034370)
chr2 (5-82)||(13029499-13029576)
chr2 (1-82)||(28611069-28611150)
chr2 (1-71)||(16290608-16290679)
chr2 (1-69)||(13030202-13030270)
chr2 (23-62)||(30748719-30748758)
[»] chr1 (14 HSPs)
chr1 (3-64)||(9226032-9226093)
chr1 (1-73)||(51445818-51445890)
chr1 (1-75)||(13894840-13894914)
chr1 (1-71)||(15743466-15743536)
chr1 (5-71)||(34350359-34350425)
chr1 (5-82)||(35943266-35943343)
chr1 (1-79)||(48096849-48096927)
chr1 (17-82)||(3616723-3616788)
chr1 (1-82)||(5612900-5612981)
chr1 (17-82)||(52077976-52078041)
chr1 (1-72)||(27556498-27556569)
chr1 (1-82)||(14478486-14478567)
chr1 (1-76)||(48527759-48527834)
chr1 (1-82)||(26286631-26286712)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-58)||(127676-127733)
[»] chr5 (6 HSPs)
chr5 (1-73)||(22048950-22049022)
chr5 (23-71)||(223455-223503)
chr5 (1-76)||(1102843-1102918)
chr5 (29-82)||(5976923-5976976)
chr5 (44-76)||(36898836-36898868)
chr5 (21-78)||(10735986-10736043)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 50810722 - 50810803
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50810722 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctt 50810803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 50865142 - 50865061
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50865142 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctcctt 50865061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 50809649 - 50809575
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50809649 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggt 50809575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 50866213 - 50866287
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50866213 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggt 50866287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 54110100 - 54110175
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| | |  ||||||||||||    
T  54110100 agatgaagaaagagagaattaattagttgttgttgactcaccataagataaaatagacctacaaaatccaatggtc 54110175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 53622952 - 53622871
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| ||||||||||| | ||||||||| |||   ||||||||||||||||||||||||||||| || ||||||    
T  53622952 agatgaagaaagtgaaaattaattggttgttgttgactcaatgtaagataaaatagacatgcgtaatccaatcgtactcctt 53622871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44602859 - 44602930
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 72  Q
    |||||||||| |||| |||||||||| ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  44602859 agatgaagaaggagagaattaattagttgttgttgactcactgtaagataaaatagacacgcgtaatccaat 44602930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11224671 - 11224752
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||  ||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||  ||||||||    
T  11224671 agatgaagaaatggaaaattaattagattttgttgactcatcataagataaaatagacttgtgtaattcaataatcctcctt 11224752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 24487139 - 24487216
Alignment:
Q  5 gaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||| ||||||||||||| ||||||||| | ||| ||||||||||||||  ||| ||||| |||||||||||||    
T  24487139 gaagaaagggaaaattaattagttgttgttgacttaccgtaagataaaatagatctgcttaatcaaatggtcctcctt 24487216  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 21074109 - 21074170
Alignment:
Q  15 aaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    |||||||||||| ||||||||| ||||  ||||||||||||||||||||| || ||||||||    
T  21074109 aaaattaattagttgttgttgactcactgtaagataaaatagacatgcgtgattcaatggtc 21074170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13621220 - 13621139
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| |  ||||||||||||||  |||||||    
T  13621220 agatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctcctt 13621139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 49380002 - 49379921
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| |  ||||||||||||||  |||||||    
T  49380002 agatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctcctt 49379921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34819099 - 34819174
Alignment:
Q  1 agatgaagaaa-gagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    ||||||||||| || ||||  |||||| ||||| || | |||||||||||||||||||| ||| ||||||||||||    
T  34819099 agatgaagaaaagaaaaaaaaaattaggtgttggtggtacaccataagataaaatagacttgcctaatccaatggt 34819174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28420062 - 28420143
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  28420062 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggccctcctt 28420143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28419034 - 28418960
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  28419034 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaataggcatgcgtaatccaatggt 28418960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31845611 - 31845692
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||| ||||||||  ||||||||| | ||| |||||||||||| || | ||||||| ||||||| |||||    
T  31845611 agatgaagaaagagaagattaattacctgttgttgacttaccgtaagataaaatacacctacgtaatctaatggtcatcctt 31845692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 42871116 - 42871035
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || || ||||||| ||||||||| || |  |||||||||||| ||||||||||| |||||||| |||||    
T  42871116 agatgaagaaagggagaaataattaggtgttgttgactcgcggtaagataaaatacacatgcgtaattcaatggtcatcctt 42871035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43202397 - 43202325
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    |||||||||||| |||||||||||||   ||||||| ||||||||||||| |||| || ||| |||||||||||||    
T  43202397 agatgaagaaagggaaaattaattag---ttgttgactcaccataagatagaatacacctgcataatccaatggtc 43202325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 9854711 - 9854766
Alignment:
Q  18 attaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 73  Q
    ||||||||| ||||||||| ||||| |||||||||| | |||||||||||||||||    
T  9854711 attaattagttgttgttgactcaccgtaagataaaacacacatgcgtaatccaatg 9854766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 42098861 - 42098791
Alignment:
Q  5 gaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    ||||||||||||||||||||||||||| |||| ||||| ||| || | |||||| ||| |||| |||||||    
T  42098861 gaagaaagagaaaattaattagatgttattgactcaccgtaaaatcacatagacctgcctaattcaatggt 42098791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6398331 - 6398405
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    |||||||||||  ||||   |||||| ||||||||||||||| ||||||||| ||||| | | ||||||||||||    
T  6398331 agatgaagaaaaggaaataaaattaggtgttgttgattcaccgtaagataaagtagacttacataatccaatggt 6398405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 232402 - 232321
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  232402 agatgaagaaagagaaaattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggttctcctt 232321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 233457 - 233538
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||    
T  233457 agatgaagaaagagaaaattaattagatgttgttgattcactgtaagataaaatagacatgtgtaatccaatggccctcctt 233538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11723087 - 11723006
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || || ||||||  ||||||||| ||||| ||||| |||||| || || |||||||||||  |||||||    
T  11723087 agatgaagaaagggagaaataattaagtgttgttgactcaccgtaagagaaaatacacctgtgtaatccaatgaccctcctt 11723006  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30334458 - 30334540
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccat-aagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||||||| |||||||||  |||||||||    
T  30334458 agatgaagaaagggaaaattaattggatgttgttgactcaccgtaaagataaaatagacatgggtaatccaagcgtcctcctt 30334540  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 39981616 - 39981544
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 73  Q
    |||||||||||| || ||||| |||| ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  39981616 agatgaagaaagggagaattagttagttgttgttgactcaccgtaagataaaatacacatgcgtaatccaatg 39981544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47059413 - 47059332
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    ||||||||||||||| || |||| || |||| |||| ||||  |||||||||||| |||||||||||||||||||| |||||    
T  47059413 agatgaagaaagagagaaataatcaggtgttattgactcactgtaagataaaatacacatgcgtaatccaatggtcatcctt 47059332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 16756154 - 16756089
Alignment:
Q  17 aattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||| ||||||||| ||||  |||||||||||| || ||||||||| |||||||||||||    
T  16756154 aattaattagttgttgttgactcactgtaagataaaatacacttgcgtaatctaatggtcctcctt 16756089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 48312313 - 48312260
Alignment:
Q  29 gttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  48312313 gttgttgactcaccgtaagataaaatagacctgcgtaatccaatggtcatcctt 48312260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 43441645 - 43441565
Alignment:
Q  2 gatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    ||||||||||||||||| ||||||  | ||||||| | ||| |||||||||||| || ||||||||||||| ||| |||||    
T  43441645 gatgaagaaagagaaaaataattacctattgttgacttaccgtaagataaaatacacttgcgtaatccaatagtcatcctt 43441565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 47060291 - 47060372
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||| ||||||| || || ||||||| |||||||||  ||||||||||||||||| || || ||||| |||||||| |||||    
T  47060291 agataaagaaagggagaaataattaggtgttgttgacacaccataagataaaatacacttgtgtaattcaatggtcatcctt 47060372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22537858 - 22537784
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    |||||||||||  |||||  |||||| ||||| || |||| | ||||||||||||||| ||| ||||||||||||    
T  22537858 agatgaagaaaatgaaaaaaaattaggtgttggtggttcatcgtaagataaaatagacctgcataatccaatggt 22537784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41328518 - 41328449
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 71  Q
    |||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| | |||||||||||||    
T  41328518 agatgaagaaag-gagaaataattaagtgttgttgactcaccgtaagataaaatacatatgcgtaatccaa 41328449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 28325343 - 28325290
Alignment:
Q  29 gttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||| ||||  ||||||||||||||| |||| ||||||||| ||||||||    
T  28325343 gttgttgactcactgtaagataaaatagacttgcgcaatccaatgatcctcctt 28325290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1830050 - 1829969
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||| ||| ||||||||||| ||||||||||| ||| | ||||||||||||||| | ||||||| |||||||||||||    
T  1830050 agatgaaggaagggaaaattaattggatgttgttgactcaacgtaagataaaatagacctacgtaatctaatggtcctcctt 1829969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36845710 - 36845635
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    |||||||||||||||||| ||||||  ||||||||| | ||| |||||||||||| || |||||||||||||||||    
T  36845710 agatgaagaaagagaaaaataattacctgttgttgacttaccgtaagataaaatacacctgcgtaatccaatggtc 36845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 38555115 - 38555174
Alignment:
Q  23 ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||    
T  38555115 ttagatgttgttgactcaccgtaagataaaatagacatgtgtaatccaatggttctcctt 38555174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 6349376 - 6349434
Alignment:
Q  13 agaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 71  Q
    |||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||    
T  6349376 agaaaattaattagttgttgttgactcaccataagataaaatacacttgcgtaatccaa 6349434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40723525 - 40723447
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctc 79  Q
    ||||||||||| |||||||||||||| |||| | || ||||| |||||||||||| ||  |||||||||||||||||||    
T  40723525 agatgaagaaaaagaaaattaattagttgttatcgactcaccgtaagataaaatacaccagcgtaatccaatggtcctc 40723447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 54485433 - 54485514
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||  ||||||||||||||||||||| ||||| ||||||| ||||||||| | ||||| || ||| ||||||    
T  54485433 agatgaagaaagaagaaattaattagatgttgttgactcaccgtaagatagaatagacatacataatctaacggttctcctt 54485514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 45535345 - 45535274
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 72  Q
    ||||||| || |||| |||||||||| ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  45535345 agatgaaaaaggagagaattaattagttgttgttgactcactgtaagataaaatagacacgcgtaatccaat 45535274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1520111 - 1520030
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || |  ||||||| ||||||||||||||| |||||||||||| || | ||||||| ||||||| |||||    
T  1520111 agatgaagaaagggagacataattaggtgttgttgattcaccgtaagataaaatacacttacgtaatctaatggtcatcctt 1520030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 26630086 - 26630009
Alignment:
Q  5 gaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||||||||||||  ||||||||| | ||| |||||||||||| || | ||||||| ||||||| |||||    
T  26630086 gaagaaagagaaaattaattacttgttgttgacttaccgtaagataaaatacacctacgtaatctaatggtcatcctt 26630009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 34327026 - 34326949
Alignment:
Q  2 gatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctc 79  Q
    |||||||||| |||||||||||||| |||| | || ||| | |||||||||||| || |||||||| |||||||||||    
T  34327026 gatgaagaaaaagaaaattaattagttgttatcgactcatcgtaagataaaatacacttgcgtaattcaatggtcctc 34326949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 52138607 - 52138678
Alignment:
Q  1 agatgaagaaagagaa-aattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 72  Q
    ||||||||||| |||| |||||||||| |||| |||| ||||| |||||||||||| ||||||||||||||||    
T  52138607 agatgaagaaa-agaagaattaattagttgttattgactcaccgtaagataaaatacacatgcgtaatccaat 52138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23103824 - 23103895
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 72  Q
    ||||||| || |||| ||||||| || ||||||||| ||||  |||||||||||||||| ||||||||||||    
T  23103824 agatgaaaaaggagagaattaatgagttgttgttgactcactgtaagataaaatagacacgcgtaatccaat 23103895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 54484541 - 54484487
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaata 55  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||||||| ||||    
T  54484541 agatgaagaaagaaaaaattaattagatgttgttggctcaccgtaagatagaata 54484487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27850752 - 27850832
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| |||| |||||| | |||||||||  |||| |||||||||||||| |||||  |||||||| ||||||||    
T  27850752 agatgaagaaagtgaaagttaattggttgttgttgacacaccgtaagataaaatagatatgcg-catccaatgatcctcctt 27850832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 42810021 - 42810072
Alignment:
Q  4 tgaagaaagagaaaattaattagatgttgttgattcaccataagataaaata 55  Q
    ||||||||| || || ||||||||||||||||| ||||| ||||||||||||    
T  42810021 tgaagaaagggagaaataattagatgttgttgactcaccgtaagataaaata 42810072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 22069534 - 22069485
Alignment:
Q  3 atgaagaaagagaaaattaattagatgttgttgattcaccataagataaa 52  Q
    ||||| |||| |||||||||||||||||| ||  ||||||||||||||||    
T  22069534 atgaataaagggaaaattaattagatgttttttgttcaccataagataaa 22069485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 44498740 - 44498687
Alignment:
Q  23 ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    |||| ||||| |||| || | ||||||||||||||||||||||||| |||||||    
T  44498740 ttaggtgttggtgatacatcctaagataaaatagacatgcgtaatctaatggtc 44498687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26496125 - 26496197
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 73  Q
    |||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| |  || |||||||||||    
T  26496125 agatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgtgtaatccaatg 26496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4920875 - 4920956
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    ||||||| |||| || |||||||||| ||||||||| ||||| |||||||||||| || |||||||||||||| ||||||||    
T  4920875 agatgaaaaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatgatcctcctt 4920956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 43034308 - 43034370
Alignment:
Q  14 gaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    ||||||||||||| |||||||||   ||| ||||||||||||||||||| |||||||||||||    
T  43034308 gaaaattaattagttgttgttgacataccgtaagataaaatagacatgcataatccaatggtc 43034370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 13029576 - 13029499
Alignment:
Q  5 gaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    ||||||||| |||||||||||  | ||||||| ||||| ||||| ||||||||||| ||||||||||||  |||||||    
T  13029576 gaagaaagaaaaaattaattaacttttgttgactcaccgtaagagaaaatagacattcgtaatccaatgaccctcctt 13029499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28611069 - 28611150
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || || ||||||  ||||||||| |||||||||||||||||| || |||||||| |||||  |||||||    
T  28611069 agatgaagaaagggagaaataattaagtgttgttgactcaccataagataaaatacacctgcgtaattcaatgaccctcctt 28611150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16290608 - 16290679
Alignment:
Q  1 agatgaagaaagagaaaattaa-ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 71  Q
    ||||||||||| |||||| ||| |||||||||  ||| ||||||||||||||||||||||||| | ||||||    
T  16290608 agatgaagaaaaagaaaaataaattagatgttaatgactcaccataagataaaatagacatgcatgatccaa 16290679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13030202 - 13030270
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatcc 69  Q
    |||||||||||| ||||||||||||| |||||| || |||   ||||||||||||||| |||| |||||    
T  13030202 agatgaagaaagggaaaattaattagttgttgtagactcaatgtaagataaaatagacctgcgcaatcc 13030270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 30748758 - 30748719
Alignment:
Q  23 ttagatgttgttgattcaccataagataaaatagacatgc 62  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  30748758 ttagatgttgttgattcaccataagatatactagacatgc 30748719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 9226032 - 9226093
Alignment:
Q  3 atgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgt 64  Q
    |||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||    
T  9226032 atgaagaaagagaaaattaattagatgttaatgactcaccgtaagataaaatagacatgcgt 9226093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 51445890 - 51445818
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 73  Q
    |||||||||||| || |||||||||| ||||||||| ||||| |||||||||||| || ||||||||||||||    
T  51445890 agatgaagaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatg 51445818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13894914 - 13894840
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggt 75  Q
    |||||||||||  ||||||||||| | ||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  13894914 agatgaagaaatggaaaattaatttgttgttgttgattcacggtaagataaaatacacatgcgtaattcaatggt 13894840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15743536 - 15743466
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 71  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |   |||||||||||    
T  15743536 agatgaagaaagaaaaaattaattagttgttgttgactcaccataagataaaatacatccgcgtaatccaa 15743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 34350425 - 34350359
Alignment:
Q  5 gaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 71  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||| ||||| || ||||||||||||    
T  34350425 gaagaaagtgaaaattaattagttgttgttgactcaccataagattaaatacacttgcgtaatccaa 34350359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 35943266 - 35943343
Alignment:
Q  5 gaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    ||||||||||| |||||||||||||||  || |||| | ||||||||||||||| |||||||| |||||||| |||||    
T  35943266 gaagaaagagataattaattagatgttaatggttcatcgtaagataaaatagacctgcgtaattcaatggtcatcctt 35943343  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48096849 - 48096927
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctc 79  Q
    ||||||||||| |||||||||||||| |||| | || ||||| |||||||||||| || |  |||||||||||||||||    
T  48096849 agatgaagaaaaagaaaattaattagttgttatcgactcaccgtaagataaaatacacctatgtaatccaatggtcctc 48096927  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 3616723 - 3616788
Alignment:
Q  17 aattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||| ||||||||| ||||  |||||||||||| || ||||||||| |||||||||||||    
T  3616723 aattaattagttgttgttgactcactctaagataaaatacacttgcgtaatctaatggtcctcctt 3616788  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5612900 - 5612981
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || |  ||||||  |||||||||||||||||||||||||||| || | ||||||| ||||||| |||||    
T  5612900 agatgaagaaagggagacataattaagtgttgttgattcaccataagataaaatacacttacgtaatctaatggtcatcctt 5612981  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 52077976 - 52078041
Alignment:
Q  17 aattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||| ||||||||| |||| ||||||||||||| || | ||||||| |||||||||||||    
T  52077976 aattaattagttgttgttgactcactataagataaaatacacttacgtaatctaatggtcctcctt 52078041  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27556569 - 27556498
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaat 72  Q
    ||||||| || |||| |||||||||| ||||||||| ||||  |||||||||||||||| || |||||||||    
T  27556569 agatgaataatgagataattaattagttgttgttgactcactgtaagataaaatagacacgcttaatccaat 27556498  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 14478567 - 14478486
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || || ||||||  ||||||||| ||||| |||||||||||| || |||||||| |||||  |||||||    
T  14478567 agatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacacctgcgtaattcaatgaccctcctt 14478486  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 48527834 - 48527759
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    |||||||||||   |||||||||||| |||| |||| |||||  ||||||||||| || ||| |||||||||||||    
T  48527834 agatgaagaaaagaaaaattaattagttgttattgactcaccggaagataaaatacacttgcataatccaatggtc 48527759  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26286712 - 26286631
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||||||| || |  ||||||| | ||||||||||||| || ||||||||| || | ||||||| ||||||| |||||    
T  26286712 agatgaagaaagggagacataattaggttttgttgattcaccgtacgataaaatacacttacgtaatctaatggtcatcctt 26286631  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 127733 - 127676
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagac 58  Q
    |||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||    
T  127733 agatgaagaaagggaaagttaattagatgttgttgactcaccgtaagataaaatagac 127676  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22048950 - 22049022
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatg 73  Q
    ||||||||| || |||||| |||||| || ||||| |||||  ||||||||||||||||||||||||||||||    
T  22048950 agatgaagagagggaaaataaattagctgatgttggttcactgtaagataaaatagacatgcgtaatccaatg 22049022  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 223503 - 223455
Alignment:
Q  23 ttagatgttgttgattcaccataagataaaatagacatgcgtaatccaa 71  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  223503 ttagatgttgttgactcaccgtaagataaaatagacatgagtaatccaa 223455  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1102918 - 1102843
Alignment:
Q  1 agatgaagaaagagaaaattaattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtc 76  Q
    ||||||||||||  |||||||||||| |||| |||| ||||| |||||||||||| || ||| ||||||| |||||    
T  1102918 agatgaagaaaggaaaaattaattagctgttattgactcaccgtaagataaaatacacttgcataatccactggtc 1102843  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 5976923 - 5976976
Alignment:
Q  29 gttgttgattcaccataagataaaatagacatgcgtaatccaatggtcctcctt 82  Q
    |||||||| ||||  ||||||||||||||| |||||||||||||| ||||||||    
T  5976923 gttgttgactcacagtaagataaaatagacttgcgtaatccaatgatcctcctt 5976976  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 36898836 - 36898868
Alignment:
Q  44 taagataaaatagacatgcgtaatccaatggtc 76  Q
    |||||||||||||||||||||||||||||||||    
T  36898836 taagataaaatagacatgcgtaatccaatggtc 36898868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 10736043 - 10735986
Alignment:
Q  21 aattagatgttgttgattcaccataagataaaatagacatgcgtaatccaatggtcct 78  Q
    |||||||||||| || | |||||| |||||||||| || ||||||||| |||||||||    
T  10736043 aattagatgttgatggtgcaccattagataaaatacacctgcgtaatcaaatggtcct 10735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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