View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10122_low_17 (Length: 258)

Name: NF10122_low_17
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10122_low_17
NF10122_low_17
[»] chr7 (10 HSPs)
chr7 (20-244)||(17825118-17825342)
chr7 (94-244)||(17849396-17849547)
chr7 (110-244)||(15676187-15676321)
chr7 (115-244)||(15664357-15664486)
chr7 (104-244)||(16103757-16103897)
chr7 (110-244)||(16173425-16173559)
chr7 (111-244)||(14606772-14606905)
chr7 (111-244)||(16025949-16026082)
chr7 (24-83)||(17849545-17849604)
chr7 (167-243)||(31103500-31103576)
[»] scaffold0289 (1 HSPs)
scaffold0289 (122-244)||(13523-13645)
[»] scaffold0400 (2 HSPs)
scaffold0400 (110-224)||(7376-7490)
scaffold0400 (108-224)||(13676-13792)
[»] scaffold0365 (2 HSPs)
scaffold0365 (110-224)||(8020-8134)
scaffold0365 (108-224)||(14319-14435)
[»] chr1 (11 HSPs)
chr1 (102-224)||(15041475-15041599)
chr1 (108-224)||(15011888-15012004)
chr1 (102-221)||(15037910-15038029)
chr1 (115-224)||(15018003-15018112)
chr1 (108-224)||(15002995-15003111)
chr1 (149-224)||(14504870-14504945)
chr1 (109-224)||(15033340-15033455)
chr1 (102-224)||(14521726-14521848)
chr1 (149-224)||(14483639-14483714)
chr1 (149-224)||(14468691-14468766)
chr1 (108-224)||(14531853-14531969)
[»] chr8 (2 HSPs)
chr8 (115-224)||(17028728-17028837)
chr8 (115-224)||(17559164-17559273)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 17825118 - 17825342
Alignment:
Q  20 acgcatagataatttgaagtagtattgttcattggtcgttaagaatgaaaatttacaaaactattatacctaaatatattagaaaaagggaatttacctg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17825118 acgcatagataatttgaagtagtattgttcattggtcgttaagaatgaaaatttacaaaactattatacctaaatatattagaaaaagggaatttacctg 17825217  T
Q  120 gtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17825218 gtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattc 17825317  T
Q  220 caaatttagaagtatattcttgctt 244  Q
    |||||||||||||||||||||||||    
T  17825318 caaatttagaagtatattcttgctt 17825342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 17849547 - 17849396
Alignment:
Q  94 tatattagaaaaagggaattta-cctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattcc 192  Q
    ||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17849547 tatattagataaagtgaatttaacctggagcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggatttagaagtttagctattcc 17849448  T
Q  193 aaagtcagagacatgagccacatattccaaatttagaagtatattcttgctt 244  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||||    
T  17849447 aaagtcagagacatgagctacatattccaagtctagaagtatattcttgctt 17849396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 15676187 - 15676321
Alignment:
Q  110 aatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgag 209  Q
    |||| |||||| ||||||||||||  ||| ||||||||||| ||| | |||||||||| |||||| ||||||||||||||||||||||| |||||| |||    
T  15676187 aattaacctggagcagcatatccataggtacctgcaaatgatgtcaagttggttgaattaggatttagaagcttagctattccaaagtctgagacacgag 15676286  T
Q  210 ccacatattccaaatttagaagtatattcttgctt 244  Q
    |||||||||| ||||  || || ||||||||||||    
T  15676287 ccacatattctaaatccagtaggatattcttgctt 15676321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 15664357 - 15664486
Alignment:
Q  115 acctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccaca 214  Q
    |||||| | ||||||||||  ||| |||||||||||||||||||||  ||||| ||||||||||||||||||  |||||||||| ||||||  |||||||    
T  15664357 acctggagaagcatatccataggtgcctgcaaatgaggtccaattgtctgaattaggattaagaagcttagccgttccaaagtctgagacacaagccaca 15664456  T
Q  215 tattccaaatttagaagtatattcttgctt 244  Q
    ||||| ||||  ||||| ||||||||||||    
T  15664457 tattctaaatccagaagaatattcttgctt 15664486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 16103897 - 16103757
Alignment:
Q  104 aaagggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagaga 203  Q
    |||||||| | |||||| |||||||||||||  || | ||||||||||||  |  | ||| ||| | ||| ||||||||||||| |||||||||| ||||    
T  16103897 aaagggaaataacctggagcagcatatccaaatgtgcatgcaaatgaggttgagctagttaaattaagatcaagaagcttagctgttccaaagtccgaga 16103798  T
Q  204 catgagccacatattccaaatttagaagtatattcttgctt 244  Q
    || ||||||||||||| ||||  ||||| ||||||||||||    
T  16103797 cacgagccacatattctaaatccagaagaatattcttgctt 16103757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 16173559 - 16173425
Alignment:
Q  110 aatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgag 209  Q
    |||| |||||| |||||||||||||  || | ||||||||| ||| |    ||| ||| ||||| ||||||||||||| |||||||||||||||||||||    
T  16173559 aattaacctggagcagcatatccaaatgtgcatgcaaatgaagtcgaggaagttaaattaggatcaagaagcttagctgttccaaagtcagagacatgag 16173460  T
Q  210 ccacatattccaaatttagaagtatattcttgctt 244  Q
    ||||| ||||  |||  ||||| ||||||||||||    
T  16173459 ccacacattcggaatccagaagaatattcttgctt 16173425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 14606905 - 14606772
Alignment:
Q  111 atttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagc 210  Q
    |||||||||| |||||||||||||  || | |||||| |||||  |  | ||| ||| | ||| ||||||||||||| |||||||||||||||||||| |    
T  14606905 atttacctggagcagcatatccaaatgtgcatgcaaacgaggttgagctcgttaaattaagatcaagaagcttagctgttccaaagtcagagacatgacc 14606806  T
Q  211 cacatattccaaatttagaagtatattcttgctt 244  Q
    |||| ||||| |||  ||||| ||||||||||||    
T  14606805 cacacattccgaatccagaagaatattcttgctt 14606772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 16026082 - 16025949
Alignment:
Q  111 atttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagc 210  Q
    |||||||||| |||||||||||||  || | |||||| |||||  |  | ||| ||| | ||| ||||||||||||| |||||||||||||||||||| |    
T  16026082 atttacctggagcagcatatccaaatgtgcatgcaaacgaggttgagctcgttaaattaagatcaagaagcttagctgttccaaagtcagagacatgacc 16025983  T
Q  211 cacatattccaaatttagaagtatattcttgctt 244  Q
    |||| ||||| |||  ||||| ||||||||||||    
T  16025982 cacacattccgaatccagaagaatattcttgctt 16025949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 17849604 - 17849545
Alignment:
Q  24 atagataatttgaagtagtattgttcattggtcgttaagaatgaaaatttacaaaactat 83  Q
    ||||||||||||||| ||| |||||| || ||||||| || |||||| ||||||||||||    
T  17849604 atagataatttgaagcagttttgttccttagtcgttacgagtgaaaaattacaaaactat 17849545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 31103576 - 31103500
Alignment:
Q  167 tcaggattaagaagcttagctattccaaagtcagagacatgagccacatattccaaatttagaagtatattcttgct 243  Q
    ||||| ||||||| ||||||| | |||||||| |||||||||||  |||| || | ||| ||||| |||||||||||    
T  31103576 tcaggcttaagaaacttagctgtcccaaagtcggagacatgagcttcatagtcaagattgagaagaatattcttgct 31103500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 13523 - 13645
Alignment:
Q  122 gcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattcca 221  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||| || || ||||||||||||| |||||||||| |||||| ||||||||||||| |    
T  13523 gcagcatatccataggtgcctgcaaatgaggtccaattgtctgaattagcatcaagaagcttagctgttccaaagtccgagacacgagccacatattcta 13622  T
Q  222 aatttagaagtatattcttgctt 244  Q
    |||  ||||| ||||||||||||    
T  13623 aatccagaagaatattcttgctt 13645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 7490 - 7376
Alignment:
Q  110 aatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgag 209  Q
    |||| |||||| ||||||||||||| ||||||| ||||  ||||||||||||  ||||| |||||||||| ||| ||| |||| ||||| ||||||||||    
T  7490 aattaacctggagcagcatatccaaaggttcctacaaaacaggtccaattggaagaatcgggattaagaaacttggctgttccgaagtctgagacatgag 7391  T
Q  210 ccacatattccaaat 224  Q
    |||||||||||||||    
T  7390 ccacatattccaaat 7376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 13792 - 13676
Alignment:
Q  108 ggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatg 207  Q
    |||||| |||||| || |||||||||| ||| |||||||| || |||   |||| |||||  ||||| || | ||| | | |||| ||||| ||||||||    
T  13792 ggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatgttggatgaattgggatttaggaacttggatgttccgaagtctgagacatg 13693  T
Q  208 agccacatattccaaat 224  Q
    ||| |||||||||||||    
T  13692 agctacatattccaaat 13676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 8134 - 8020
Alignment:
Q  110 aatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgag 209  Q
    |||| |||||| ||||||||||||| ||||||| ||||  ||||||||||||  ||||| |||||||||| ||| ||| |||| ||||| ||||||||||    
T  8134 aattaacctggagcagcatatccaaaggttcctacaaaacaggtccaattggaagaatcgggattaagaaacttggctgttccgaagtctgagacatgag 8035  T
Q  210 ccacatattccaaat 224  Q
    |||||||||||||||    
T  8034 ccacatattccaaat 8020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 14435 - 14319
Alignment:
Q  108 ggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatg 207  Q
    |||||| |||||| || |||||||||| ||| |||||||| || |||   |||| |||||  ||||| || | ||| | | |||| ||||| ||||||||    
T  14435 ggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatgttggatgaattgggatttaggaacttggatgttccgaagtctgagacatg 14336  T
Q  208 agccacatattccaaat 224  Q
    ||| |||||||||||||    
T  14335 agctacatattccaaat 14319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 15041599 - 15041475
Alignment:
Q  102 aaaaagggaatttacctggtgcagcatatccaatggttc--ctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtca 199  Q
    |||||||||||| |||||||||||||||||||| ||| |  ||||||| || |||  ||||| |||||  ||||| | || ||||| | ||||||||||     
T  15041599 aaaaagggaattcacctggtgcagcatatccaaaggtgcgcctgcaaaagaagtcatattggatgaattgggatttaaaaacttagatgttccaaagtct 15041500  T
Q  200 gagacatgagccacatattccaaat 224  Q
    ||||||||||| |||||||||||||    
T  15041499 gagacatgagctacatattccaaat 15041475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 15012004 - 15011888
Alignment:
Q  108 ggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatg 207  Q
    |||||| |||||| || |||||||||| ||| |||||||| || |||  ||||| |||||  ||||| |||| ||||| | |||||||||| ||||||||    
T  15012004 ggaattgacctggagcggcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttagaaacttagatgttccaaagtctgagacatg 15011905  T
Q  208 agccacatattccaaat 224  Q
    ||| |||||||||||||    
T  15011904 agctacatattccaaat 15011888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 15038029 - 15037910
Alignment:
Q  102 aaaaagggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcaga 201  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||| || | |  ||||| ||| |  ||||| |||| ||||| | |||||||||| ||    
T  15038029 aaaaagggaattgacctggagcagcatatccaaaggtgcctgcaaaagaagacatattggatgagttgggatttagaaacttagatgttccaaagtctga 15037930  T
Q  202 gacatgagccacatattcca 221  Q
    ||||||||| ||||||||||    
T  15037929 gacatgagctacatattcca 15037910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 15018112 - 15018003
Alignment:
Q  115 acctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccaca 214  Q
    |||||| ||||||||||||| ||| |||||||| || |||  ||||| |||||  ||||| |||| ||||| | ||||||| || ||||||||||| |||    
T  15018112 acctggagcagcatatccaaaggtgcctgcaaaagaagtcatattggatgaattgggatttagaaacttagatgttccaaaatctgagacatgagctaca 15018013  T
Q  215 tattccaaat 224  Q
    ||||||||||    
T  15018012 tattccaaat 15018003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 15003111 - 15002995
Alignment:
Q  108 ggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatg 207  Q
    |||||| |||||| ||||||||||||| ||| |||||||| || |||  |||||  ||||  ||||| |||| ||||| | ||||||| || ||||||||    
T  15003111 ggaattgacctggagcagcatatccaaaggtgcctgcaaaagaagtcatattggacgaattgggatttagaaacttagatgttccaaaatctgagacatg 15003012  T
Q  208 agccacatattccaaat 224  Q
    ||| |||||||||||||    
T  15003011 agctacatattccaaat 15002995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 14504945 - 14504870
Alignment:
Q  149 gaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattccaaat 224  Q
    |||||||||||||  | ||| |||||||||| ||||||| |||| || || |||||||||||||||||||||||||    
T  14504945 gaggtccaattggaagcatcgggattaagaaacttagctgttccgaaatccgagacatgagccacatattccaaat 14504870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 15033455 - 15033340
Alignment:
Q  109 gaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatga 208  Q
    ||||| |||||| |||| ||||||||  || |||||||| || |||  ||||| |||||  ||||| |||| ||||| | |||||||||| |||||||||    
T  15033455 gaattcacctggagcagtatatccaaaagtgcctgcaaaagaagtcatattggatgaattgggattgagaaacttagatgttccaaagtctgagacatga 15033356  T
Q  209 gccacatattccaaat 224  Q
    || |||||||||||||    
T  15033355 gctacatattccaaat 15033340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 14521726 - 14521848
Alignment:
Q  102 aaaaagggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcaga 201  Q
    ||||| ||| || |||||| ||||||||||||| ||| |||||||| || |||  ||| | |||||  ||||| |||| ||||| | |||||||||| ||    
T  14521726 aaaaaaggagttgacctggagcagcatatccaaaggtgcctgcaaaagaagtcatattcgatgaattgggatttagaaacttagatgttccaaagtctga 14521825  T
Q  202 gacatgagccacatattccaaat 224  Q
    ||||||||| ||| |||||||||    
T  14521826 gacatgagctacacattccaaat 14521848  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 14483714 - 14483639
Alignment:
Q  149 gaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattccaaat 224  Q
    |||||||||||||    ||| |||||||||| ||||||| |||| || || |||||||||||||||||||||||||    
T  14483714 gaggtccaattggaattatcgggattaagaaacttagctgttccgaaatctgagacatgagccacatattccaaat 14483639  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 14468766 - 14468691
Alignment:
Q  149 gaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattccaaat 224  Q
    |||||||||||||  | ||  ||||| |||| ||||||| |||| || || |||||||||||||||||||||||||    
T  14468766 gaggtccaattggaagcattgggattgagaaacttagctgttccgaaatctgagacatgagccacatattccaaat 14468691  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 14531853 - 14531969
Alignment:
Q  108 ggaatttacctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatg 207  Q
    |||||| |||||| || |||||||||| ||| |||||||| || |||  ||||| ||| |  ||||| |||| ||| | | |||| ||||| ||||||||    
T  14531853 ggaattgacctggagctgcatatccaaaggtgcctgcaaaagaagtcatattggatgagttgggattcagaaacttggatgttccgaagtctgagacatg 14531952  T
Q  208 agccacatattccaaat 224  Q
    ||| || ||||||||||    
T  14531953 agctacgtattccaaat 14531969  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 17028837 - 17028728
Alignment:
Q  115 acctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccaca 214  Q
    |||||| ||||  ||||||| ||| ||| |||| | |||||||||||  |||||  ||||||||| ||||||| |||| || || ||||||||||| |||    
T  17028837 acctggagcagtgtatccaaaggtgcctacaaaagcggtccaattggaagaatcgagattaagaaacttagctgttccgaaatctgagacatgagcaaca 17028738  T
Q  215 tattccaaat 224  Q
    ||||||||||    
T  17028737 tattccaaat 17028728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 17559273 - 17559164
Alignment:
Q  115 acctggtgcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccaca 214  Q
    |||||| ||||  ||||||| ||| ||| |||| | |||||||||||  |||||  ||||||||| ||||||| |||| || || ||||||||||| |||    
T  17559273 acctggagcagtgtatccaaaggtgcctacaaaagcggtccaattggaagaatcgagattaagaaacttagctgttccgaaatctgagacatgagcaaca 17559174  T
Q  215 tattccaaat 224  Q
    ||||||||||    
T  17559173 tattccaaat 17559164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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