View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10122_low_18 (Length: 254)
Name: NF10122_low_18
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10122_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3219262 - 3219019
Alignment:
| Q |
1 |
ttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagt |
100 |
Q |
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| T |
3219262 |
ttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagt |
3219163 |
T |
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| Q |
101 |
cctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagat |
200 |
Q |
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| T |
3219162 |
cctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgctgcccagaacagat |
3219063 |
T |
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| Q |
201 |
gttatgcgcattagaccatggtatattctatttgccttttcttc |
244 |
Q |
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| T |
3219062 |
gttatgcgcattagacgatggtatattctatttgccttttcttc |
3219019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15986419 - 15986661
Alignment:
| Q |
1 |
ttattattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactacagtagt |
100 |
Q |
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| T |
15986419 |
ttattattgatcatgcagatgtaatgacaatgcaggttagcattctttgtttaaattattgcagaaaattgactttacccatgatttgaactacagtag- |
15986517 |
T |
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| Q |
101 |
cctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccgcttaccatctacgccgcccagaacagat |
200 |
Q |
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| T |
15986518 |
ccagtttctcattattgttgaaacttgtcagaattggtctcatgtgcgtccagttattgaacacttgaaccgcttaccatctacgccgcccagaacagat |
15986617 |
T |
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| Q |
201 |
gttatgcgcattagaccatggtatattctatttgccttttcttc |
244 |
Q |
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| T |
15986618 |
gttatgcgcattagaccatggtatattctatttggcttttcttc |
15986661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 23727568 - 23727396
Alignment:
| Q |
3 |
attattgatcatgcagatgtaatggcaatgcaggttagcattgtttgtttaaattattgcaaaaaattgacttttcccatgatttgaactac---agtag |
99 |
Q |
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| T |
23727568 |
attattgatcacgcagatataatagcaatgcaggtttgtattatatgtttaaattattgcaacaaattgactttacccatgatttgaacgacgctatgaa |
23727469 |
T |
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| Q |
100 |
tcctgtttctcattattgttgaaccttgtcagaattggtctcatgtgcatacagttattgaacacttaaaccg |
172 |
Q |
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| T |
23727468 |
ttgtgtttctcattattgttgaaacttgtcaggattggtctcatgttaataccattattcaacagttaaaccg |
23727396 |
T |
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