View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10122_low_19 (Length: 254)
Name: NF10122_low_19
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10122_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 18252646 - 18252882
Alignment:
| Q |
3 |
aacatgaagatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaa |
102 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
18252646 |
aacatgaagatgattctaactatcttcttcattttttctcttctttcccttgctcatgcatccgtagtagatttctgcgtagcagattacaatgcaccaa |
18252745 |
T |
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| Q |
103 |
atggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacattat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18252746 |
atggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacattat |
18252845 |
T |
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| Q |
203 |
caaagccgctgttaccactgcaatagacgaacaattt |
239 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
18252846 |
caaagccgctgttaccactgcaatagacgcacaattt |
18252882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 18256922 - 18256686
Alignment:
| Q |
3 |
aacatgaagatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaa |
102 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
18256922 |
aacatgaagatgattctaactatcttcttcattttttctcttctttcccttgctcatgcatccgtagtagatttctgcgtagcagattacaatgcaccaa |
18256823 |
T |
|
| Q |
103 |
atggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacattat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18256822 |
atggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacattat |
18256723 |
T |
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| Q |
203 |
caaagccgctgttaccactgcaatagacgaacaattt |
239 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
18256722 |
caaagccgctgttaccactgcaatagacgcacaattt |
18256686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 18245545 - 18245763
Alignment:
| Q |
6 |
atgaagatgattctaacaatcttcttcattttttctcttctttcccttgctcatgcatccgtagtcgatttctgcgtagcagattacaatgcgccaaatg |
105 |
Q |
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|||||||||||| || | |||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||||| |
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| T |
18245545 |
atgaagatgattgtagctatctccttcattttttctcttctttccctttctcatgcatcagtagtagatttctgcgtagcagattacaatttaccaaatg |
18245644 |
T |
|
| Q |
106 |
gcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacattatcaa |
205 |
Q |
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|||| || ||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
18245645 |
gccccgccggatattcttgcaaaacaccatcaaaagtaaccgaaaatgacttcgcctaccacggcctagctgcagccggaaacacctcaaacattatcaa |
18245744 |
T |
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| Q |
206 |
agccgctgttaccactgca |
224 |
Q |
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||| ||||| ||| ||||| |
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| T |
18245745 |
agcagctgtgacccctgca |
18245763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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