View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10122_low_22 (Length: 250)
Name: NF10122_low_22
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10122_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5129501 - 5129731
Alignment:
| Q |
1 |
taaagactaagaagacaagatagatgaagaaaagcatatataagacatcaggaaactgaatgataaagaactgtcttgtttttcctaatgaaggtaacaa |
100 |
Q |
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| T |
5129501 |
taaagactaagaagacaagatagatgaagaaaagcatatataagacatcaggaaactgaatgataaa--actga---gcattaagcactc--ggcaacaa |
5129593 |
T |
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| Q |
101 |
ggtagcaagtcattctccgaaaaccatagataatgactaatgaacagagattaaattttacaataaaaagaaaagacatcatttgcatcctaaaacaaga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
5129594 |
ggtagcaagtcattctctgaaaaccatagataatgactaatgaacagagattaaagtttacaa-aaaaagaaaagacatcattttcatcctaaaacaaga |
5129692 |
T |
|
| Q |
201 |
actttcataaccctacctattgtatggaagttgcttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5129693 |
actttcataaccctacctattgtatggaagttgcttcat |
5129731 |
T |
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