View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10122_low_27 (Length: 205)

Name: NF10122_low_27
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10122_low_27
NF10122_low_27
[»] chr4 (15 HSPs)
chr4 (16-84)||(31961309-31961377)
chr4 (16-87)||(31897471-31897542)
chr4 (16-87)||(6318839-6318910)
chr4 (16-87)||(44360254-44360325)
chr4 (16-87)||(46372192-46372263)
chr4 (16-87)||(50869923-50869994)
chr4 (16-73)||(13262394-13262451)
chr4 (17-87)||(10209204-10209272)
chr4 (16-87)||(42285746-42285817)
chr4 (16-82)||(35555693-35555759)
chr4 (16-85)||(2589242-2589311)
chr4 (16-80)||(17900655-17900719)
chr4 (34-87)||(10775530-10775583)
chr4 (16-87)||(6478726-6478797)
chr4 (17-80)||(35622720-35622783)
[»] chr8 (6 HSPs)
chr8 (16-87)||(7531687-7531758)
chr8 (16-87)||(30812859-30812930)
chr8 (16-87)||(16351546-16351616)
chr8 (16-87)||(39953307-39953378)
chr8 (35-87)||(32043758-32043810)
chr8 (16-71)||(26685962-26686017)
[»] chr5 (11 HSPs)
chr5 (16-87)||(37065644-37065715)
chr5 (18-87)||(33667603-33667672)
chr5 (16-84)||(3442914-3442982)
chr5 (16-87)||(1525812-1525883)
chr5 (16-87)||(1935290-1935361)
chr5 (16-87)||(21916048-21916119)
chr5 (16-87)||(28411844-28411915)
chr5 (16-87)||(10082788-10082859)
chr5 (16-84)||(11002464-11002532)
chr5 (37-87)||(21952523-21952573)
chr5 (35-87)||(31635982-31636034)
[»] chr2 (10 HSPs)
chr2 (16-87)||(12489845-12489916)
chr2 (16-87)||(44437764-44437835)
chr2 (17-87)||(5759039-5759109)
chr2 (16-87)||(4598605-4598676)
chr2 (16-87)||(12470940-12471011)
chr2 (16-83)||(20129644-20129711)
chr2 (16-87)||(28960254-28960325)
chr2 (16-87)||(42543403-42543474)
chr2 (16-62)||(19334195-19334241)
chr2 (16-69)||(29968654-29968707)
[»] chr7 (6 HSPs)
chr7 (16-87)||(34745915-34745986)
chr7 (16-87)||(45558498-45558569)
chr7 (16-85)||(19119467-19119536)
chr7 (16-84)||(5336089-5336157)
chr7 (38-87)||(36514273-36514322)
chr7 (18-87)||(25578028-25578097)
[»] chr6 (3 HSPs)
chr6 (16-87)||(7513432-7513503)
chr6 (19-87)||(10617280-10617348)
chr6 (46-87)||(38931-38972)
[»] chr1 (11 HSPs)
chr1 (16-87)||(28528523-28528594)
chr1 (20-84)||(26016608-26016672)
chr1 (23-87)||(40419807-40419871)
chr1 (16-68)||(12261756-12261808)
chr1 (46-87)||(43898400-43898441)
chr1 (16-87)||(17640110-17640181)
chr1 (16-81)||(7083064-7083129)
chr1 (23-72)||(37263540-37263589)
chr1 (16-80)||(13578945-13579008)
chr1 (39-87)||(27637697-27637745)
chr1 (16-72)||(51584927-51584983)
[»] chr3 (3 HSPs)
chr3 (16-86)||(31454268-31454338)
chr3 (16-84)||(37351578-37351646)
chr3 (16-70)||(3987519-3987573)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 31961309 - 31961377
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatc 84  Q
    |||||||||||||||||| |||||||||| || |||||||| |||||||||||||||| ||||||||||    
T  31961309 atgaatcaaacgacgtcatagtgttctatcaacaaccatgtctttctccaactcatttatctctagatc 31961377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 31897471 - 31897542
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||||| ||||| |||||||||| || |||||||| |||||||||||||||| |||||||||||||    
T  31897471 atgaatcaaacggcgtcatagtgttctatcaacaaccatgtctttctccaactcatttatctctagatcctt 31897542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 6318910 - 6318839
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||  || || ||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  6318910 atgaatcaaacgacaccatagagttctatcaaaaaccatgtttttctccaattcatttttctctagatcctt 6318839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 44360325 - 44360254
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||| | ||| ||||||||    
T  44360325 atgaatcaaacgacgtcatagtgttctatcaaaaaccgtgtctttctccaactcattggcctcaagatcctt 44360254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 46372263 - 46372192
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||| ||||  || ||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  46372263 atgaatcaaaggacgctacggtgttctatcaaaaaccatgtctttctccaactcatttatctctagatcctt 46372192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 50869923 - 50869994
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||| || |||||||||  ||||||||||| |||||| ||||||||| |||||||||||||    
T  50869923 atgaatcaaacgacgccatagtgttctaccaaaaaccatgtctttctctaactcatttatctctagatcctt 50869994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 13262451 - 13262394
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcattt 73  Q
    |||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  13262451 atgaatcaaacgacgtcatagttttctatcaaaaaccatgtctttctccaactcattt 13262394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 10209272 - 10209204
Alignment:
Q  17 tgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||||||| ||  ||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  10209272 tgaatcaaacgacgcca--gtgttctatcaaaaaccatgtctttctccaactcattaatctctagatcctt 10209204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42285746 - 42285817
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| | | || ||| |||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  42285746 atgaatcaaacaatgccatagtattctatcaaaaaccatgtctttctccaactcatttatctctagatcctt 42285817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 35555693 - 35555759
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctaga 82  Q
    ||||||||||||||| || | ||| |||| ||||||||||| |||||||||||||||| ||||||||    
T  35555693 atgaatcaaacgacgccatactgtactatcaaaaaccatgtctttctccaactcatttatctctaga 35555759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 2589311 - 2589242
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcc 85  Q
    ||||||||||||||| || |||||||||| ||||||||| ||||  |||||||||||  |||||||||||    
T  2589311 atgaatcaaacgacgccatagtgttctatcaaaaaccatattttcatccaactcattaatctctagatcc 2589242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17900719 - 17900655
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctcta 80  Q
    ||||||||||| ||| || |||| ||||||||||||||||| ||||| |||||||||| ||||||    
T  17900719 atgaatcaaacaacgccatagtgctctattaaaaaccatgtctttctacaactcatttatctcta 17900655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 10775530 - 10775583
Alignment:
Q  34 cagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||||||||||| |||||||||||||||  | |||||||||||    
T  10775530 cagtgttctatcaaaaaccatgtctttctccaactcattgttttctagatcctt 10775583  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 6478726 - 6478797
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||| ||||  | |||||| ||| ||||||||||| |||||| |||||||||  ||||||||||||    
T  6478726 atgaatcaaaggacgctatagtgttgtatcaaaaaccatgtctttctctaactcatttacctctagatcctt 6478797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 35622720 - 35622783
Alignment:
Q  17 tgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctcta 80  Q
    |||||||||||| | |  || ||||||| ||||||||||| |||||||||||||||| ||||||    
T  35622720 tgaatcaaacgatgccctagcgttctatcaaaaaccatgtctttctccaactcatttatctcta 35622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 7531687 - 7531758
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||  || |||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  7531687 atgaatcaaacgacaccatagtgttctatcaaaaaccatgtctttctccaactcatttatctctagatcctt 7531758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 30812859 - 30812930
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||  || |||||||||| ||||||||||| ||| |||||||||||| |||||||||||||    
T  30812859 atgaatcaaacgacaccatagtgttctatcaaaaaccatgtctttttccaactcatttatctctagatcctt 30812930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 16351616 - 16351546
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||| | || |||||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  16351616 atgaatcaaacgatgccatagtgttctattaaaaaccatgtctttct-caactcattaatctctagatcctt 16351546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 39953307 - 39953378
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||  || ||||| | || |||||||||||||||||| ||||||||| |||||||||||||    
T  39953307 atgaatcaaacaactccatagtgtcccatcaaaaaccatgtttttctctaactcatttatctctagatcctt 39953378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 32043810 - 32043758
Alignment:
Q  35 agtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||| ||||||||||| |||||||||||||||  ||| |||||||||    
T  32043810 agtgttctatcaaaaaccatgtctttctccaactcattgatctttagatcctt 32043758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26685962 - 26686017
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcat 71  Q
    |||||||||||| |  || |||||||||| ||||||||||| ||||||||||||||    
T  26685962 atgaatcaaacggcaccatagtgttctatcaaaaaccatgtctttctccaactcat 26686017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 37065715 - 37065644
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||||||| ||| |||| ||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  37065715 atgaatcaaacgacttcatagtgctctatcaaaaaccatgtctttctccaactcatttatctctagatcctt 37065644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 33667672 - 33667603
Alignment:
Q  18 gaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||| ||| || |||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  33667672 gaatcaaacaacgccaaagtgttctatcaaaaaccatgtctttctccaactcattaatctctagatcctt 33667603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 3442914 - 3442982
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatc 84  Q
    ||||||||||||||| || |||||||||| ||||||||||| ||||||||| |||||  ||||||||||    
T  3442914 atgaatcaaacgacgccatagtgttctatcaaaaaccatgtctttctccaattcattaatctctagatc 3442982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1525883 - 1525812
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||| || || ||||||| ||||||||||| |||||||||||||||| ||||| |||||||    
T  1525883 atgaatcaaacaacgccatagcgttctatcaaaaaccatgtctttctccaactcatttatctctggatcctt 1525812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1935361 - 1935290
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||  || |||||||| | ||||||| ||| |||||||||||||||| |||||||||||||    
T  1935361 atgaatcaaacgacaccatagtgttctgtcaaaaaccttgtctttctccaactcatttatctctagatcctt 1935290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 21916119 - 21916048
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||| |||| || ||||||| |||||  |||| |||||||||||||||| |||||||||||||    
T  21916119 atgaatcaaacgatgtcatagagttctatcaaaaataatgtatttctccaactcatttatctctagatcctt 21916048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 28411915 - 28411844
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||| || |||||||||| | ||| ||||||||||||||| |||||| |||||||||||||    
T  28411915 atgaatcaaacaacgccatagtgttctatcagaaaacatgtttttctccaagtcatttatctctagatcctt 28411844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 10082788 - 10082859
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||| ||||||||| |||||  ||  ||||||||||| |||||||||||||||  |||||||||||||    
T  10082788 atgaatcagacgacgtcatagtgtgttaacaaaaaccatgtctttctccaactcattaatctctagatcctt 10082859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 11002464 - 11002532
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatc 84  Q
    ||||||||||| | | || |||||||||| |||||| |||  |||||||||||||||| ||||||||||    
T  11002464 atgaatcaaacaatgccatagtgttctatcaaaaactatgcctttctccaactcatttatctctagatc 11002532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 21952573 - 21952523
Alignment:
Q  37 tgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||| ||||||||||| |||||||||| ||||  |||||||||||||    
T  21952573 tgttctatcaaaaaccatgtctttctccaacccattaatctctagatcctt 21952523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 31635982 - 31636034
Alignment:
Q  35 agtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||  ||||||||||| |||||||||||||||  |||||| ||||||    
T  31635982 agtgttctaccaaaaaccatgtgtttctccaactcattgatctctatatcctt 31636034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 12489845 - 12489916
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||| |||||||||||||    
T  12489845 atgaatcaaacgacgccaaagtgttatatcaaaaaccatgtctttctccaactcatttatctctagatcctt 12489916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 44437764 - 44437835
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||| |||| ||| || |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44437764 atgaattaaacaacgccatagtgttctatcaaaaaccatgtttttctccaactcatttatctctagatcctt 44437835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 5759039 - 5759109
Alignment:
Q  17 tgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||||||  || |||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  5759039 tgaatcaaacgacaccatagtgttctatcaaaaaccatgtctttctccaactcattgatctctagatcctt 5759109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 4598605 - 4598676
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||| |||| || |||||||||| |||| | |||| |||||||||||||||| |||||||||||||    
T  4598605 atgaatcaaatgacgccatagtgttctatcaaaatctatgtctttctccaactcatttatctctagatcctt 4598676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 12470940 - 12471011
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||| ||||||||| || |||| | ||| ||||||||||| |||||||||||||||| |||||||||||||    
T  12470940 atgaagcaaacgacgccatagtgatatatcaaaaaccatgtctttctccaactcatttatctctagatcctt 12471011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 20129644 - 20129711
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagat 83  Q
    |||||||||||||||||| |||||| |||||| |||||||| ||||||||| |||||  |||||||||    
T  20129644 atgaatcaaacgacgtcatagtgttatattaacaaccatgtatttctccaattcattaatctctagat 20129711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 28960254 - 28960325
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||  || |||| ||||| ||||||||| | |||||||||||||||| |||||||||||||    
T  28960254 atgaatcaaacgacaccatagtgctctatcaaaaaccatatctttctccaactcatttatctctagatcctt 28960325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 42543474 - 42543403
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||| || || ||||||| ||||| || || |||||||||||||||| |||||||||||||    
T  42543474 atgaatcaaacaacgccatagcgttctatcaaaaagcacgtctttctccaactcatttatctctagatcctt 42543403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 19334195 - 19334241
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttct 62  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||||    
T  19334195 atgaatcaaatgacgtcatagtgttctatcaaaaaccatgtctttct 19334241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29968654 - 29968707
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactc 69  Q
    ||||||||||| ||| || ||||||||||| |||||||||  ||||||||||||    
T  29968654 atgaatcaaacaacgccatagtgttctattgaaaaccatggctttctccaactc 29968707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 34745986 - 34745915
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||| || || ||||||| |||||||||||||||||||||||||||| ||| |||||||||    
T  34745986 atgaatcaaacaacgccatagcgttctatcaaaaaccatgtttttctccaactcatttatctttagatcctt 34745915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 45558569 - 45558498
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||| |||| || |||||||||| ||||||||||| |||| ||||||||||| |||||||||||||    
T  45558569 atgaatcaaatgacgccatagtgttctatcaaaaaccatgtctttcaccaactcatttatctctagatcctt 45558498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 19119467 - 19119536
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcc 85  Q
    |||||||||||||||||| |||||| ||| |||| |||||| |||||| ||||||||  |||||||||||    
T  19119467 atgaatcaaacgacgtcatagtgttgtatcaaaagccatgtctttctcaaactcattgatctctagatcc 19119536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 5336157 - 5336089
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatc 84  Q
    ||||||||||||||| || ||| ||| || ||||||||||| |||||||||||||||  ||||||||||    
T  5336157 atgaatcaaacgacgccatagtattcaatcaaaaaccatgtctttctccaactcattaatctctagatc 5336089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 36514273 - 36514322
Alignment:
Q  38 gttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||| ||||||||||| ||||||||| |||||| |||||||||||||    
T  36514273 gttctatcaaaaaccatgtctttctccaattcatttatctctagatcctt 36514322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 25578097 - 25578028
Alignment:
Q  18 gaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||| ||| ||| || |||||| ||| ||||||||||| ||||||||| |||||  |||||||||||||    
T  25578097 gaatctaacaacgccatagtgttttatcaaaaaccatgtctttctccaattcattaatctctagatcctt 25578028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 7513432 - 7513503
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| ||| || |||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  7513432 atgaatcaaacaacgccatagtgttctatcaaaaaccatgtctttctccaactcattcatctctagatcctt 7513503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10617280 - 10617348
Alignment:
Q  19 aatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||| ||| || |||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  10617280 aatcaaacaacgccaaagtgttctatcaaaaaccatgtctttctccaactcattaatctctagatcctt 10617348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 38972 - 38931
Alignment:
Q  46 aaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||| |||||||||||||||| |||||||||||||    
T  38972 aaaaaccatgtctttctccaactcatttatctctagatcctt 38931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 28528594 - 28528523
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||| || |||| ||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  28528594 atgaatcaaacgacgccatagtggtctatcaaaaaccatgtctttctccaactcattaatctctagatcctt 28528523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 26016672 - 26016608
Alignment:
Q  20 atcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatc 84  Q
    ||||||||||| |||| |||||||  |||||||||||||||||| ||||||||| ||||||||||    
T  26016672 atcaaacgacgccacaatgttctaccaaaaaccatgtttttctctaactcatttatctctagatc 26016608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 40419871 - 40419807
Alignment:
Q  23 aaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||| || |||| ||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  40419871 aaacgacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatctctagatcctt 40419807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12261756 - 12261808
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaact 68  Q
    |||||||||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  12261756 atgaatcaaacgacatcacagcgttctatcaaaaaccatgtctttctccaact 12261808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 43898441 - 43898400
Alignment:
Q  46 aaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  43898441 aaaaaccatgtttttctccaactcattaatctctagatcctt 43898400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 17640110 - 17640181
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    ||||||||||||||| || | |||||||||| || | || ||||| |||||||||||  |||||||||||||    
T  17640110 atgaatcaaacgacgccataatgttctattacaagcaatatttttatccaactcattaatctctagatcctt 17640181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 7083129 - 7083064
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctag 81  Q
    ||||||||||||||| || |||||||||| | || | |||| |||||||||||||||  |||||||    
T  7083129 atgaatcaaacgacgccatagtgttctatcataaccgatgtctttctccaactcattaatctctag 7083064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 37263589 - 37263540
Alignment:
Q  23 aaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatt 72  Q
    |||||||| || |||||||||| ||||| ||||| |||||||||||||||    
T  37263589 aaacgacgccatagtgttctatcaaaaatcatgtgtttctccaactcatt 37263540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 13578945 - 13579008
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctcta 80  Q
    |||||||||||||||||| |||||||||| ||||  ||||  |||||| ||||||||| ||||||    
T  13578945 atgaatcaaacgacgtcatagtgttctatcaaaattcatg-ctttctcaaactcatttatctcta 13579008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 27637697 - 27637745
Alignment:
Q  39 ttctattaaaaaccatgtttttctccaactcatttgtctctagatcctt 87  Q
    |||||| ||||||||||| |||||||||||||||  || ||||||||||    
T  27637697 ttctatcaaaaaccatgtctttctccaactcattgatcactagatcctt 27637745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 51584983 - 51584927
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatt 72  Q
    ||||||||||| | |||| |||||||||| |||||| |||| |||||||| ||||||    
T  51584983 atgaatcaaacaatgtcatagtgttctatcaaaaacaatgtctttctccagctcatt 51584927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 31454268 - 31454338
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatcct 86  Q
    |||||||||| |||| || |||||||||| ||||||||||| ||||||||| |||||  | ||||||||||    
T  31454268 atgaatcaaatgacgccatagtgttctatcaaaaaccatgtctttctccaattcattaatatctagatcct 31454338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 37351646 - 37351578
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactcatttgtctctagatc 84  Q
    |||||||||||||||||  |||||||||  ||||||||| | |||||||| ||||||  ||||||||||    
T  37351646 atgaatcaaacgacgtcgtagtgttctaacaaaaaccatatctttctccatctcattaatctctagatc 37351578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 3987573 - 3987519
Alignment:
Q  16 atgaatcaaacgacgtcacagtgttctattaaaaaccatgtttttctccaactca 70  Q
    ||||||||||| ||| || ||||| |||| ||||||||||| |||||||||||||    
T  3987573 atgaatcaaacaacgccatagtgtcctatcaaaaaccatgtctttctccaactca 3987519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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