View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10122_low_6 (Length: 366)
Name: NF10122_low_6
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10122_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 30280106 - 30279767
Alignment:
| Q |
19 |
gcttcatcaattggaagaaaggaagcctactacttgtatattctactatgttatttgcttcaacatctttactttcttcaccttcacatgtcacattact |
118 |
Q |
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| T |
30280106 |
gcttcatcaattgtaagaaaggaagcctactacttgtatattctactatgttatttgcttcaacatctttactttcttcaccttcacatgtcacattact |
30280007 |
T |
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| Q |
119 |
aatgctactagccttcggtttcaaagtggttatagtcccctctattcccgttcttctaaactccaacacaaatagaagcaaagtgagccatataatagct |
218 |
Q |
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| T |
30280006 |
aatgctactagccttcggtttcaaagtggttatagtcccctctattcccgttcttctaaactccaacacaaatagaagcaaagtgagccatataatagct |
30279907 |
T |
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| Q |
219 |
tgaacaactgaagcttgaaccacaagatccacacccataggtccatacataggtttcaccattggtattccaacaacaagagaatttgttagagtacaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30279906 |
tgaacaactgaagcttgaaccacaagatccacacccataggtccatacataggtttcaccattggtattccaacaacaagagaatttgttagagtacaca |
30279807 |
T |
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| Q |
319 |
aagagaaacttgttatagaccaagaataacttcctttgct |
358 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
30279806 |
aagagaaacttgttatagaccaagaataacttactttgct |
30279767 |
T |
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