View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10122_low_9 (Length: 345)

Name: NF10122_low_9
Description: NF10122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10122_low_9
NF10122_low_9
[»] chr4 (7 HSPs)
chr4 (119-327)||(22423925-22424136)
chr4 (134-181)||(24449368-24449415)
chr4 (133-178)||(35653733-35653778)
chr4 (133-181)||(53011981-53012029)
chr4 (133-175)||(26328788-26328830)
chr4 (133-183)||(51066059-51066109)
chr4 (120-176)||(21791305-21791361)
[»] chr2 (9 HSPs)
chr2 (119-180)||(39081647-39081708)
chr2 (133-181)||(13997579-13997627)
chr2 (122-175)||(1419164-1419217)
chr2 (133-182)||(29480385-29480434)
chr2 (133-181)||(1226017-1226065)
chr2 (1-45)||(38599523-38599566)
chr2 (119-178)||(36059658-36059717)
chr2 (119-182)||(15457753-15457817)
chr2 (133-181)||(17117395-17117443)
[»] chr3 (9 HSPs)
chr3 (119-178)||(46904994-46905053)
chr3 (119-181)||(27303439-27303501)
chr3 (119-175)||(42009039-42009095)
chr3 (134-182)||(51147205-51147253)
chr3 (133-180)||(7767332-7767379)
chr3 (119-180)||(25598833-25598895)
chr3 (119-180)||(21784531-21784592)
chr3 (133-181)||(28132484-28132532)
chr3 (133-181)||(48626779-48626827)
[»] chr5 (12 HSPs)
chr5 (133-179)||(16515771-16515817)
chr5 (134-180)||(7390152-7390198)
chr5 (121-181)||(17326099-17326159)
chr5 (119-173)||(138395-138449)
chr5 (134-180)||(931636-931682)
chr5 (119-175)||(33281925-33281981)
chr5 (119-174)||(18873712-18873766)
chr5 (119-176)||(8379199-8379255)
chr5 (133-178)||(41612989-41613034)
chr5 (132-180)||(13424130-13424178)
chr5 (119-167)||(13656463-13656511)
chr5 (133-181)||(37047049-37047097)
[»] chr1 (8 HSPs)
chr1 (119-181)||(42740357-42740419)
chr1 (119-181)||(37873506-37873568)
chr1 (121-182)||(17674103-17674164)
chr1 (133-181)||(26486125-26486173)
chr1 (132-181)||(18127688-18127737)
chr1 (133-174)||(22386593-22386634)
chr1 (133-180)||(276-323)
chr1 (133-181)||(51109848-51109896)
[»] chr8 (6 HSPs)
chr8 (134-181)||(35875168-35875215)
chr8 (133-177)||(33453021-33453065)
chr8 (121-181)||(36514905-36514964)
chr8 (134-182)||(30915035-30915083)
chr8 (133-181)||(42076374-42076422)
chr8 (119-167)||(18112376-18112424)
[»] chr7 (8 HSPs)
chr7 (119-179)||(36438104-36438164)
chr7 (134-182)||(7370058-7370106)
chr7 (119-169)||(40737760-40737810)
chr7 (132-182)||(44875908-44875958)
chr7 (134-171)||(4100228-4100265)
chr7 (133-181)||(29730839-29730887)
chr7 (133-181)||(29742060-29742108)
chr7 (133-181)||(33910331-33910379)
[»] chr6 (4 HSPs)
chr6 (119-178)||(30915115-30915174)
chr6 (119-169)||(3748329-3748379)
chr6 (134-171)||(22504011-22504048)
chr6 (133-181)||(2618619-2618667)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 119 - 327
Target Start/End: Original strand, 22423925 - 22424136
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctgaccgagacacca---ttccgtcatcttaaaattttat 215  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||||||||   |||| |||||||||||||||||    
T  22423925 ttattttactgagacctattttaaaaatagaaccgagactcctatttcataggaacagccatgaccgagacaccaccattccctcatcttaaaattttat 22424024  T
Q  216 aaaacaagataatgattagtgattggtaatgggctatgagccatgaggtgaggatgtttatgatagggataaaccttaaccttaaagagacttcactatt 315  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22424025 aaaacaagataatgattaatgattggtaatgggctatgagccatgaggtgaggatgtttatgatagggataaaccttaaccttaaagagacttcactatt 22424124  T
Q  316 gtatatgggaga 327  Q
    ||||||||||||    
T  22424125 gtatatgggaga 22424136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 24449368 - 24449415
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24449368 ctattttaaaaatagaaccgaacctcctatttcatagtaacggccctg 24449415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 35653778 - 35653733
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggcc 178  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||    
T  35653778 cctatcttaaaaatagaaccgagccttctatttcataggaacggcc 35653733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 53011981 - 53012029
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| ||| |||| |||||||||||| |||||||||||||    
T  53011981 cctattttaaaaagagagccgagcctcctatttcacaggaacggccctg 53012029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 26328830 - 26328788
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacg 175  Q
    ||||||||||||| |||  ||||||||||||||||||||||||    
T  26328830 cctattttaaaaagagagtcgaacctcctatttcataggaacg 26328788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 51066109 - 51066059
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctgac 183  Q
    ||||||||||| | |||||||| |||||||||||||||| ||| |||||||    
T  51066109 cctattttaaatagagaaccgagcctcctatttcatagggacgtccctgac 51066059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 21791361 - 21791305
Alignment:
Q  120 tattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacgg 176  Q
    |||||||||| | ||||||||||||| |||  ||| |||| ||||||||||||||||    
T  21791361 tattttactggagcctattttaaaaagagagtcgagcctcatatttcataggaacgg 21791305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 39081647 - 39081708
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39081647 ttattttactgggacctattttaaaaatagaaccgaacctcctatttcataggaacggccct 39081708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 13997579 - 13997627
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  13997579 cctattttaaaaatagaaccgagcctcctatttcataggaacggtcctg 13997627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 1419164 - 1419217
Alignment:
Q  122 ttttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacg 175  Q
    |||||||  ||||||||||||||||||||||||||||||||||| || ||||||    
T  1419164 ttttactcgaacctattttaaaaatagaaccgaacctcctattttattggaacg 1419217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 29480434 - 29480385
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    |||||||||||||||||||| | |||| |||||||||||||||| |||||    
T  29480434 cctattttaaaaatagaaccaagcctcatatttcataggaacgggcctga 29480385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 1226065 - 1226017
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| |||  ||| ||||||||||||||||||||||||||    
T  1226065 cctattttaaaaagagagtcgagcctcctatttcataggaacggccctg 1226017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38599523 - 38599566
Alignment:
Q  1 tttcaaactgacaccgttcggtaaatttcatctctctttcactta 45  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  38599523 tttcaaac-gacaccgttaggtaaatttcatctctctttcactta 38599566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 36059717 - 36059658
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggcc 178  Q
    |||||||||||  |||||||||||||| |||  ||| ||||||||||||||| |||||||    
T  36059717 ttattttactggtacctattttaaaaaaagagtcgagcctcctatttcatagcaacggcc 36059658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 15457753 - 15457817
Alignment:
Q  119 ttattttactgaa-acctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    |||||||| |||| |||||||||||| | ||| |||| |||||||||||||||| ||||| ||||    
T  15457753 ttattttattgaagacctattttaaatagagagccgagcctcctatttcatagggacggctctga 15457817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17117443 - 17117395
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||| | ||| |||| |||||||||||||||| |||||||||    
T  17117443 cctattttaaatagagagccgagcctcctatttcatagggacggccctg 17117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 46904994 - 46905053
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggcc 178  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  46904994 ttattttactggaacctattttaaaaatagaaccgagcctcctatttcataggaacggcc 46905053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 27303439 - 27303501
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  27303439 ttattttactagaacctattttaaaaatagaaccgagcctcctatttcattggaacggccctg 27303501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 42009095 - 42009039
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacg 175  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  42009095 ttattttactgaagcttattttaaaaatagaaccgaacctcatatttcataggaacg 42009039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 51147205 - 51147253
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51147205 ctattttaaaaatagaaccgagcctcctatttcataggaacggccctga 51147253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 7767332 - 7767379
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7767332 cctattttaaaaatagaaccgagcctcctatttcataggaacggccct 7767379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 25598895 - 25598833
Alignment:
Q  119 ttattttactgaa-acctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    |||||||||| || |||||||||||||| ||| |||| |||||||||| ||||||||||||||    
T  25598895 ttattttactaaagacctattttaaaaagagagccgagcctcctattttataggaacggccct 25598833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 21784592 - 21784531
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    ||||||||||   |||||||||||||| |||  |||||||||||||||| ||| ||||||||    
T  21784592 ttattttactatgacctattttaaaaagagagtcgaacctcctatttcagagggacggccct 21784531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 28132532 - 28132484
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| ||| |||| |||||||||||| ||| |||||||||    
T  28132532 cctattttaaaaagagagccgagcctcctatttcacagggacggccctg 28132484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 48626827 - 48626779
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||| | |||||||| |||||||||||||||| |||| ||||    
T  48626827 cctattttaaatagagaaccgagcctcctatttcatagggacggtcctg 48626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 16515771 - 16515817
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccc 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16515771 cctattttaaaaatagaaccgaacctcctatttcataggaacggccc 16515817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 7390198 - 7390152
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  7390198 ctattttaaaaatagaaccgagccttctatttcataggaacggccct 7390152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 17326099 - 17326159
Alignment:
Q  121 attttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||| | |||||||||||||||||||||| |||| |||||||||| ||| ||||||    
T  17326099 attttactggagcctattttaaaaatagaaccgagcctcatatttcatagaaactgccctg 17326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 138395 - 138449
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaa 173  Q
    ||||||||||||| |||||| ||||||||||||| | |||| |||||||||||||    
T  138395 ttattttactgaagcctattctaaaaatagaaccaagcctcttatttcataggaa 138449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 931636 - 931682
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  931636 ctattttaaaaagagagccgaacctcctatttcataggaacgaccct 931682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 33281925 - 33281981
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacg 175  Q
    |||||||||||| |||||||||||||| |||  | |||||| |||||||||||||||    
T  33281925 ttattttactgagacctattttaaaaagagagtcaaacctcatatttcataggaacg 33281981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 18873712 - 18873766
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaac 174  Q
    |||||||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||    
T  18873712 ttattttagtgagacctattttaaaa-tagaaccgagcctcctattttataggaac 18873766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 8379255 - 8379199
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacgg 176  Q
    |||||||||| | |||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  8379255 ttattttact-agacctattttaaaaagagagccgaatctcctatttcataagaacgg 8379199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 41612989 - 41613034
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggcc 178  Q
    ||||||||||||| ||| | || |||||||||||||||||||||||    
T  41612989 cctattttaaaaagagagcagagcctcctatttcataggaacggcc 41613034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 13424130 - 13424178
Alignment:
Q  132 acctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    |||||||||||||| ||| |||| |||||||||||| ||| ||||||||    
T  13424130 acctattttaaaaagagagccgagcctcctatttcacagggacggccct 13424178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 13656463 - 13656511
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttca 167  Q
    ||||||||||   |||||||||||||| ||| |||||||||||||||||    
T  13656463 ttattttactatgacctattttaaaaagagagccgaacctcctatttca 13656511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 37047049 - 37047097
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| ||| |||||||||||||||||  || |||||||||    
T  37047049 cctattttaaaaagagagccgaacctcctatttcacggggacggccctg 37047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 42740357 - 42740419
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    |||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42740357 ttattttactggggcctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 42740419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 37873568 - 37873506
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    |||||||||||   |||||||||||||||||| ||| ||||||||||||||| ||||||||||    
T  37873568 ttattttactggggcctattttaaaaatagaatcgagcctcctatttcatagaaacggccctg 37873506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 17674164 - 17674103
Alignment:
Q  121 attttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    ||||||||| | |||||||||||||||||  |||||||| ||||||||||||||| ||||||    
T  17674164 attttactggagcctattttaaaaatagagtcgaacctcttatttcataggaacgaccctga 17674103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 26486173 - 26486125
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||||    
T  26486173 cctattttgaaaatagaaccgagcctcctattttataggaacggccctg 26486125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 18127737 - 18127688
Alignment:
Q  132 acctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||| |||| ||||||||||||||||||||| ||| |||||||||    
T  18127737 acctattttgaaaagagaaccgaacctcctatttcacagggacggccctg 18127688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 22386634 - 22386593
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaac 174  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  22386634 cctattttaaaaataaaaccgagcctcctatttcataggaac 22386593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 276 - 323
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccct 180  Q
    ||||||||||||| |||||||| |||||||||||| |||||| |||||    
T  276 cctattttaaaaagagaaccgagcctcctatttcacaggaacagccct 323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 51109896 - 51109848
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| ||| |||| |||||||||||| ||| |||||||||    
T  51109896 cctattttaaaaagagagccgagcctcctatttcacagggacggccctg 51109848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 35875168 - 35875215
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35875168 ctattttaaaaatagaaccgaacctcctatttcatagtaacggccctg 35875215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 33453021 - 33453065
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggc 177  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  33453021 cctattttaaaaagagaactgaacctcctatttcataggaacggc 33453065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 36514964 - 36514905
Alignment:
Q  121 attttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    |||||||||||  ||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  36514964 attttactgaagtctaatttaaaaata-aaccaaacctcctatttcataggaacggccctg 36514905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 30915083 - 30915035
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    |||||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  30915083 ctattttaaaaagagagccgaacctcctattttataagaacggccctga 30915035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 42076374 - 42076422
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    |||||||||| |||||||||||||||| ||||||| | |||||||||||    
T  42076374 cctattttaacaatagaaccgaacctcttatttcacatgaacggccctg 42076422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 18112376 - 18112424
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttca 167  Q
    ||||||||||   |||||||||||||| ||| |||||||||||||||||    
T  18112376 ttattttactaggacctattttaaaaagagagccgaacctcctatttca 18112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 36438164 - 36438104
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggccc 179  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||| |||| |||||||    
T  36438164 ttattttactgaggcctattttaaaaatagaaccgagcctcctatttcgtaggtacggccc 36438104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 7370058 - 7370106
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  7370058 ctattttaaaaatagaaccgagcctcctatttcataggaatgaccctga 7370106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 40737810 - 40737760
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcata 169  Q
    ||||||||||  || ||||||||||||||||||||| ||||||||||||||    
T  40737810 ttattttactcgaatctattttaaaaatagaaccgagcctcctatttcata 40737760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 44875958 - 44875908
Alignment:
Q  132 acctattttaaaaatagaaccgaacctcctatttcataggaacggccctga 182  Q
    |||||||||||||| |||  ||| |||||||||||||||| ||||||||||    
T  44875958 acctattttaaaaagagagtcgagcctcctatttcatagggacggccctga 44875908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 4100228 - 4100265
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcatagg 171  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  4100228 ctattttaaaaagagagccgaacctcctatttcatagg 4100265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 29730887 - 29730839
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| |||  ||| |||||||||||||||||||| |||||    
T  29730887 cctattttaaaaagagagtcgagcctcctatttcataggaacgaccctg 29730839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 29742060 - 29742108
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| |||  ||| |||||||||||||||||||| |||||    
T  29742060 cctattttaaaaagagagtcgagcctcctatttcataggaacgaccctg 29742108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 33910331 - 33910379
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| ||| |||| |||||||||||| ||| |||||||||    
T  33910331 cctattttaaaaagagagccgagcctcctatttcacagggacggccctg 33910379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 30915174 - 30915115
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcataggaacggcc 178  Q
    ||||||||||||||||||||||||||| |||   || |||| ||||||||||||||||||    
T  30915174 ttattttactgaaacctattttaaaaagagagttgagcctcttatttcataggaacggcc 30915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 3748379 - 3748329
Alignment:
Q  119 ttattttactgaaacctattttaaaaatagaaccgaacctcctatttcata 169  Q
    ||||||||||   ||||||||||||||||||||||| ||||||||||||||    
T  3748379 ttattttactcggacctattttaaaaatagaaccgagcctcctatttcata 3748329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 22504011 - 22504048
Alignment:
Q  134 ctattttaaaaatagaaccgaacctcctatttcatagg 171  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  22504011 ctattttaaaaagagaaccgagcctcctatttcatagg 22504048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 2618619 - 2618667
Alignment:
Q  133 cctattttaaaaatagaaccgaacctcctatttcataggaacggccctg 181  Q
    ||||||||||||| ||| ||||||||||||||||| | | |||||||||    
T  2618619 cctattttaaaaagagagccgaacctcctatttcacatggacggccctg 2618667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University