View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10123_high_6 (Length: 217)

Name: NF10123_high_6
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10123_high_6
NF10123_high_6
[»] chr5 (22 HSPs)
chr5 (1-203)||(23074931-23075138)
chr5 (57-206)||(25730968-25731117)
chr5 (57-200)||(4268259-4268402)
chr5 (51-206)||(20205109-20205264)
chr5 (51-206)||(27532784-27532939)
chr5 (57-200)||(15988633-15988776)
chr5 (57-206)||(27292594-27292742)
chr5 (51-203)||(12660470-12660622)
chr5 (51-206)||(8388240-8388395)
chr5 (88-206)||(22767151-22767269)
chr5 (43-206)||(32632661-32632823)
chr5 (51-200)||(41940621-41940770)
chr5 (79-199)||(11375407-11375527)
chr5 (57-156)||(26597385-26597484)
chr5 (96-206)||(26076479-26076590)
chr5 (67-206)||(30573555-30573694)
chr5 (51-206)||(34652139-34652287)
chr5 (60-160)||(31908320-31908420)
chr5 (66-180)||(12717678-12717792)
chr5 (66-180)||(12778902-12779016)
chr5 (84-180)||(30222744-30222840)
chr5 (66-155)||(14823666-14823755)
[»] chr8 (18 HSPs)
chr8 (62-206)||(477934-478078)
chr8 (59-206)||(11870426-11870573)
chr8 (51-206)||(33642642-33642797)
chr8 (57-203)||(40588611-40588757)
chr8 (57-203)||(13415183-13415329)
chr8 (58-206)||(7127384-7127532)
chr8 (59-206)||(598115-598262)
chr8 (57-206)||(9496938-9497087)
chr8 (57-206)||(3606615-3606766)
chr8 (51-165)||(23854086-23854200)
chr8 (51-169)||(185507-185624)
chr8 (57-202)||(8451005-8451150)
chr8 (79-206)||(36194499-36194626)
chr8 (51-155)||(37712227-37712331)
chr8 (106-185)||(28315316-28315395)
chr8 (97-195)||(8670203-8670301)
chr8 (114-167)||(4275922-4275975)
chr8 (114-167)||(26159187-26159240)
[»] chr4 (25 HSPs)
chr4 (51-206)||(49951467-49951622)
chr4 (57-206)||(2065013-2065162)
chr4 (57-200)||(44935966-44936109)
chr4 (38-203)||(51259410-51259575)
chr4 (51-206)||(21321683-21321839)
chr4 (38-206)||(29655544-29655712)
chr4 (51-206)||(51734850-51735005)
chr4 (51-199)||(18442032-18442180)
chr4 (51-199)||(37245737-37245885)
chr4 (57-206)||(56065793-56065942)
chr4 (51-199)||(32576933-32577081)
chr4 (61-206)||(41835189-41835334)
chr4 (44-206)||(26422480-26422642)
chr4 (68-206)||(28426354-28426492)
chr4 (68-206)||(49119278-49119416)
chr4 (51-206)||(24989812-24989966)
chr4 (84-206)||(23095401-23095523)
chr4 (51-200)||(28537669-28537820)
chr4 (57-206)||(8754341-8754490)
chr4 (62-206)||(47226210-47226352)
chr4 (38-205)||(55735150-55735323)
chr4 (106-206)||(43840203-43840303)
chr4 (143-206)||(3347351-3347414)
chr4 (126-195)||(33582916-33582985)
chr4 (116-168)||(51364644-51364696)
[»] chr1 (21 HSPs)
chr1 (51-206)||(5609493-5609648)
chr1 (51-206)||(4395312-4395467)
chr1 (57-206)||(48949602-48949751)
chr1 (51-206)||(36733850-36733999)
chr1 (57-200)||(44527413-44527556)
chr1 (62-206)||(51113480-51113624)
chr1 (57-204)||(25682811-25682958)
chr1 (57-202)||(16816679-16816824)
chr1 (51-206)||(44602906-44603056)
chr1 (57-206)||(52109613-52109762)
chr1 (70-206)||(14485183-14485319)
chr1 (62-200)||(2885388-2885529)
chr1 (57-206)||(21031309-21031458)
chr1 (97-199)||(17371648-17371750)
chr1 (44-200)||(24538634-24538790)
chr1 (129-206)||(5594266-5594343)
chr1 (82-195)||(48166412-48166525)
chr1 (64-130)||(38679050-38679116)
chr1 (85-180)||(4898524-4898619)
chr1 (51-166)||(23332583-23332698)
chr1 (106-164)||(23163360-23163418)
[»] chr7 (20 HSPs)
chr7 (51-206)||(16732087-16732242)
chr7 (51-206)||(17710221-17710376)
chr7 (51-206)||(29200833-29200988)
chr7 (51-200)||(16098644-16098793)
chr7 (51-203)||(17877552-17877704)
chr7 (51-206)||(3601806-3601961)
chr7 (79-206)||(24251621-24251748)
chr7 (79-206)||(44481269-44481396)
chr7 (51-203)||(22289395-22289547)
chr7 (38-206)||(30493488-30493656)
chr7 (48-199)||(9328487-9328638)
chr7 (57-206)||(1581776-1581926)
chr7 (51-199)||(3275188-3275337)
chr7 (107-206)||(24139221-24139320)
chr7 (79-206)||(33224438-33224565)
chr7 (51-206)||(30824373-30824527)
chr7 (61-199)||(47580039-47580177)
chr7 (97-169)||(35013759-35013831)
chr7 (114-181)||(6056280-6056347)
chr7 (97-165)||(35030573-35030641)
[»] chr2 (17 HSPs)
chr2 (51-206)||(88713-88868)
chr2 (57-202)||(18344176-18344321)
chr2 (48-199)||(9710106-9710257)
chr2 (51-206)||(11291942-11292096)
chr2 (51-206)||(34695782-34695937)
chr2 (51-206)||(34718194-34718349)
chr2 (51-206)||(35158721-35158878)
chr2 (51-206)||(12130516-12130671)
chr2 (57-206)||(26198842-26198991)
chr2 (51-200)||(1417875-1418014)
chr2 (67-206)||(25552315-25552454)
chr2 (57-206)||(14827240-14827388)
chr2 (67-176)||(13109777-13109886)
chr2 (106-206)||(22845735-22845832)
chr2 (68-173)||(44017229-44017334)
chr2 (59-154)||(36445449-36445544)
chr2 (74-162)||(10244492-10244580)
[»] chr3 (20 HSPs)
chr3 (57-203)||(34497253-34497399)
chr3 (57-203)||(53497192-53497338)
chr3 (57-206)||(27608781-27608930)
chr3 (51-199)||(42340162-42340310)
chr3 (51-206)||(2121235-2121390)
chr3 (57-206)||(55199671-55199820)
chr3 (51-203)||(2615637-2615789)
chr3 (73-206)||(26046864-26046997)
chr3 (67-206)||(31341603-31341742)
chr3 (86-199)||(647055-647168)
chr3 (57-206)||(55213485-55213634)
chr3 (51-166)||(27747603-27747718)
chr3 (57-206)||(19117598-19117747)
chr3 (51-206)||(11020058-11020213)
chr3 (57-197)||(46007459-46007599)
chr3 (57-167)||(1702806-1702916)
chr3 (97-203)||(48227568-48227674)
chr3 (57-126)||(24176930-24176999)
chr3 (114-188)||(18720856-18720930)
chr3 (97-199)||(49525079-49525181)
[»] chr6 (13 HSPs)
chr6 (51-206)||(34104343-34104498)
chr6 (51-203)||(14680316-14680468)
chr6 (59-206)||(11731547-11731694)
chr6 (61-206)||(15605872-15606017)
chr6 (48-206)||(21944506-21944664)
chr6 (51-182)||(28107293-28107424)
chr6 (57-203)||(19690760-19690906)
chr6 (51-204)||(27443084-27443240)
chr6 (57-206)||(15053053-15053202)
chr6 (44-179)||(29367960-29368096)
chr6 (67-184)||(3100415-3100529)
chr6 (119-181)||(5542589-5542651)
chr6 (57-91)||(30801984-30802018)
[»] scaffold0446 (1 HSPs)
scaffold0446 (57-206)||(350-499)
[»] scaffold0922 (1 HSPs)
scaffold0922 (48-201)||(147-300)
[»] scaffold0198 (1 HSPs)
scaffold0198 (64-206)||(20325-20467)
[»] scaffold0003 (1 HSPs)
scaffold0003 (51-204)||(44121-44277)
[»] scaffold0252 (1 HSPs)
scaffold0252 (97-185)||(13321-13407)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 23074931 - 23075138
Alignment:
Q  1 gccttcgagtccgattcatctctagtgcaacctttta-----tcggtccatagtaattcataattctatgttattgtttctaatattatttatcagttat 95  Q
    |||||||||||| ||||||||||||||||| ||||       ||||||||| || |||||||||||||||||||||||| || |||||||||||||||||    
T  23074931 gccttcgagtccaattcatctctagtgcaagctttatcgtcttcggtccatggtgattcataattctatgttattgtttatagtattatttatcagttat 23075030  T
Q  96 gtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtat 195  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||    
T  23075031 gtttacattccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtcaccgtat 23075130  T
Q  196 tttttatt 203  Q
    ||||||||    
T  23075131 tttttatt 23075138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 25730968 - 25731117
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||     
T  25730968 aattctatgttattgtttctagtattatttatcagttatatttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatac 25731067  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||||||| ||||||||||||| |||  |||||||||||||||    
T  25731068 tttagctagggcggcctgttcttgggctagtcactgtattttttattctt 25731117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 4268259 - 4268402
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  4268259 aattctatgctattgtttctagtattaattctcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatac 4268358  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||    
T  4268359 tttatctagggcggcatgttcttgggctagtcaccgtatttttt 4268402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 20205109 - 20205264
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| |||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  20205109 attcaaaattctatgctattgtttctagtattatatatcagttatctttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgc 20205208  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| |||||||||||| || | ||||||||| | ||| ||||||||| ||||||    
T  20205209 tcatactttagctagggcagcctattcttgggccagtcaacgtatttttgattctt 20205264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 27532939 - 27532784
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||| || ||||||||| | ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |    
T  27532939 attcagaattctttgctattgtttcaagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttac 27532840  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    | ||| ||||||||||| | |||||||||||||||||||  |||||||||||||||    
T  27532839 ttatactttagctagggtgacatgttcttgggctaatcactgtattttttattctt 27532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 15988776 - 15988633
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||     
T  15988776 aattctatgttattgtttctagtattatttatcagttatctttacattacaacttcgaggtgaagtttgttaggagacaagcagacatggttgctcatac 15988677  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    |||||||| |||||| || | |||||||| ||| | ||||||||    
T  15988676 tttagctaaggcggcctgctattgggctagtcaccatatttttt 15988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 27292594 - 27292742
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||     
T  27292594 aattttatgctattgtttctagtattaattatcagttatctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatac 27292693  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||| | ||||||||||||||| ||| ||||||||||||||||    
T  27292694 tttagctaggg-gacatgttcttgggctagtcaccgtattttttattctt 27292742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 12660470 - 12660622
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||  |||||| || |||||||||||||||||||||||||||||  |||    
T  12660470 attcagaattctatgatattgtttctagtattatttttcagttatgtttacattctaacttcgagctgaagtttgttaggagacaagcgaacatgactgc 12660569  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||| |||||||||| |||| |||||||| |||||||| | |||||||||||    
T  12660570 tcatactttagctaggacggcctgttcttgagctaatcaacatattttttatt 12660622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 8388240 - 8388395
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||| ||||||||| | |||||||| |||||| | |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  8388240 attcagaattttatgctattgtttccagtattatttttcagttttctttacattccaacttcgaggggaagtttgttaggagacaagcgaacatggttgc 8388339  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||| |||||||||| ||  ||||||||||||| ||| ||||||||||||||||    
T  8388340 tcatagcttagctagggtggtttgttcttgggctagtcaccgtattttttattctt 8388395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 22767269 - 22767151
Alignment:
Q  88 tcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaat 187  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  22767269 tcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagt 22767170  T
Q  188 catcgtattttttattctt 206  Q
    || ||||||||| ||||||    
T  22767169 caccgtatttttaattctt 22767151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 206
Target Start/End: Original strand, 32632661 - 32632823
Alignment:
Q  43 ccatagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaac 142  Q
    ||||||| ||||| |||||||||  |||||||||||||||||||||  ||||| ||||||||  |||||| |||||| |||| ||| |||||||||||||    
T  32632661 ccatagtgattcagaattctatgacattgtttctaatattatttatttgttatctttacattctaacttcgaggtgacgtttattatgagacaagcgaac 32632760  T
Q  143 atggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    || ||||| |||| |||||||| |||||| ||||||||||||| ||| ||||||||||||||||    
T  32632761 atagttgcccatactttagcta-ggcggcctgttcttgggctagtcaccgtattttttattctt 32632823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 41940770 - 41940621
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||    
T  41940770 attcagaattctatgctattgtttctagtattatttaccggttatctttacattccaacttcgaggtgaagtttgttaggagacaagagaacatgattgc 41940671  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    | ||| |||||||||| | || |||| |||||||| ||| ||||||||||    
T  41940670 taatactttagctaggactgcttgttattgggctagtcaccgtatttttt 41940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 11375527 - 11375407
Alignment:
Q  79 tattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttct 178  Q
    |||||||||| |||||| |||||||| ||||| | ||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  11375527 tattatttatgagttatctttacattccaactccgaggtgaagtttgttaagagacaagcgaacatagttgctcatactttagctagggcggcctgttct 11375428  T
Q  179 tgggctaatcatcgtattttt 199  Q
    ||||||| ||| |||||||||    
T  11375427 tgggctattcaccgtattttt 11375407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 26597484 - 26597385
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||||||||||||||| |||||||| ||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26597484 aattttatgttattgtttctagtattatttttcaattatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatag 26597385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 26076479 - 26076590
Alignment:
Q  96 gtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcata-gtttagctagggcggcatgttcttgggctaatcatcgta 194  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||  ||||  || |||||||||| ||||||  |||    
T  26076479 gtttacattccaacttcaaggtgaagtttgttaggagacaagcaaacatggttgctcatatttttagtcagggtagcctgttcttgggataatcactgta 26076578  T
Q  195 ttttttattctt 206  Q
    ||||||||||||    
T  26076579 ttttttattctt 26076590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 30573694 - 30573555
Alignment:
Q  67 tattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagg 166  Q
    |||||||| || ||||||||||||||||| |||| |||  || ||  ||||||| |||||||| ||||||||||||||||||| ||||| |||||||| |    
T  30573694 tattgtttttagtattatttatcagttatctttatattttaattttgaggtgaaatttgttagaagacaagcgaacatggttgttcatattttagctaag 30573595  T
Q  167 gcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||  |||| ||||| || ||| ||||||||||||||||    
T  30573594 gcggtctgtttttgggttagtcaccgtattttttattctt 30573555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 34652287 - 34652139
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||||||||||||||| |||||||||||| |||| |||||||| |||||||     || ||||||    ||||||||||||||||||||    
T  34652287 attcagaattatatgttattgtttctagtattatttatcaattatctttacattccaacttc-----gaggtttgt----agacaagcgaacatggttgc 34652197  T
Q  151 tc--atagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||  ||| |||| |||||  ||| | |||||||| || ||| ||||||||||||||||    
T  34652196 tcatatactttaactaggatggcttattcttgggttagtcaccgtattttttattctt 34652139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 31908420 - 31908320
Alignment:
Q  60 tctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagttt 159  Q
    |||||| |||||||| |||||||||||||||||||| || ||||| ||||||  || |||||||||||||  || || | |||||||||||||||| |||    
T  31908420 tctatgctattgtttataatattatttatcagttatcttcacatttcaactttgagatgaagtttgttagtcgataaacaaacatggttgctcatacttt 31908321  T
Q  160 a 160  Q
    |    
T  31908320 a 31908320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 12717678 - 12717792
Alignment:
Q  66 ttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctag 165  Q
    ||||||||||| ||||||||| | |||||  |||||||| ||| || ||| |||||||| || |  |||||||||| |||||||||||||  ||||| ||    
T  12717678 ttattgtttctcatattatttttgagttagttttacatttcaattttaagatgaagtttattcgacgacaagcgaatatggttgctcataccttagcgag 12717777  T
Q  166 ggcggcatgttcttg 180  Q
    ||||||  |||||||    
T  12717778 ggcggcccgttcttg 12717792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 12778902 - 12779016
Alignment:
Q  66 ttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctag 165  Q
    ||||||||||| ||||||||| | |||||  |||||||| ||| || ||| |||||||| || |  |||||||||| |||||||||||||  ||||| ||    
T  12778902 ttattgtttctcatattatttttgagttagttttacatttcaattttaagatgaagtttattcgacgacaagcgaatatggttgctcataccttagcgag 12779001  T
Q  166 ggcggcatgttcttg 180  Q
    ||||||  |||||||    
T  12779002 ggcggcccgttcttg 12779016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 30222840 - 30222744
Alignment:
Q  84 tttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttg 180  Q
    ||||||| |||| ||||||||  |||||  | ||||||||||||| |||||| || |||||| ||||||||| ||||  ||||||||| ||||||||    
T  30222840 tttatcaattatctttacattctaactttgatgtgaagtttgttaagagacatgcaaacatgattgctcatactttaattagggcggcctgttcttg 30222744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 14823755 - 14823666
Alignment:
Q  66 ttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcata 155  Q
    ||||||||||| ||||||||||| |||||  |||||||| || ||| ||| |||||||| || || |||||  ||| |||||||||||||    
T  14823755 ttattgtttctcatattatttatgagttagttttacattccatctttaagatgaagtttattcggcgacaaatgaatatggttgctcata 14823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 478078 - 477934
Alignment:
Q  62 tatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttag 161  Q
    |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  478078 tatgatattgtttctaatattatttatcagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttag 477979  T
Q  162 ctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||    
T  477978 ctagggcgtcctgttcttgggctaatcaccgtattttttattctt 477934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 11870426 - 11870573
Alignment:
Q  59 ttctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtt 158  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  11870426 ttctatgctattgtttctagtattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactt 11870525  T
Q  159 tagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||  | ||||||||||||||||| | ||||||||||||||    
T  11870526 tagctagggcaacctgttcttgggctaatcaccatattttttattctt 11870573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 33642797 - 33642642
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  33642797 attcagaattcaatgatattgtttctagtattatttatcagttatctttacattccaacttcaaggcgaagtttgttaggagacaagcgaacatggttgt 33642698  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||| ||  ||||||||||||| ||| ||||||||||||||||    
T  33642697 tcatactttagctagggtggtctgttcttgggctagtcaccgtattttttattctt 33642642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 40588757 - 40588611
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||     
T  40588757 aattctatgctattgtttatagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatac 40588658  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  40588657 tttagctagggcggcctgttcttgggctagtcaccgtattttttatt 40588611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 203
Target Start/End: Original strand, 13415183 - 13415329
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| |||||||| || |||||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  13415183 aattttatgctattgtttttagtattatttatcaattatctttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatac 13415282  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||||||||||||  ||||||||||||| ||| |||||||||||||    
T  13415283 tttagctagggcggtctgttcttgggctagtcaccgtattttttatt 13415329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 206
Target Start/End: Original strand, 7127384 - 7127532
Alignment:
Q  58 attctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagt 157  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||| ||||||  | |||||||||||||||||||||||||||||| ||||||||| |    
T  7127384 attctatgttattgtttcaagtattatttatcagttatctttacattccaactttgatgtgaagtttgttaggagacaagcgaacatgattgctcatact 7127483  T
Q  158 ttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||||||||  ||||||||||||| ||| || |||||| ||||||    
T  7127484 ttagctagggcggtctgttcttgggctagtcaccgcatttttaattctt 7127532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 598262 - 598115
Alignment:
Q  59 ttctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtt 158  Q
    ||||||| ||||||||||| |||||||||| |||||| |||||||| |||||||  |||||| |||||||||||||||||||||||||||||||||| ||    
T  598262 ttctatgctattgtttctagtattatttattagttatctttacatttcaacttcgtggtgaaatttgttaggagacaagcgaacatggttgctcatactt 598163  T
Q  159 tagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||| |||||  ||||||| ||||| ||| ||||||||||||||||    
T  598162 tagctaaggcggtctgttcttaggctagtcaccgtattttttattctt 598115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 9496938 - 9497087
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||||||||||| |||| |||||||||| || || |||||||  ||||||||  ||||||||| ||||||||||||||||||| |||||| |||     
T  9496938 aattctatgttattgttgctaacattatttatctgtgatatttacatcccaacttcagagtgaagtttattaggagacaagcgaacatagttgcttatac 9497037  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||||||||||||    
T  9497038 tttagctagggcggcctgttcttggactagtcaccgtattttttattctt 9497087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 3606766 - 3606615
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||||||| ||||||| |||||     
T  3606766 aattctatgctattgtttctagtattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaatatggttgttcatac 3606667  T
Q  157 tttagctagggcg--gcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||| |  || ||||||| ||||| ||| ||||||||| ||||||    
T  3606666 tttagctagggtgacgcctgttcttaggctagtcaccgtatttttaattctt 3606615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 23854086 - 23854200
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  23854086 attcagaattctatgctattgtttctagtattagttatccgttatctttacattccaacttcaaggtgaactttgttaggagacaagcgaacatggttgc 23854185  T
Q  151 tcatagtttagctag 165  Q
    ||||| |||||||||    
T  23854186 tcatactttagctag 23854200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 185624 - 185507
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||  ||| ||||| ||||||||||||||||||||||||| ||||     
T  185624 attcagaattctatgctattgtttctagtattatttatcagttatctttacatt-cacattcgaggtgtagtttgttaggagacaagcgaacatagttgg 185526  T
Q  151 tcatagtttagctagggcg 169  Q
    |||||||||||||||||||    
T  185525 tcatagtttagctagggcg 185507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 8451150 - 8451005
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| ||||||||||| |||| |||||| |||||||||| ||||||||  |||||| ||||||||||||||| |||||||||||||||||||| |||||     
T  8451150 aattttatgttattgtgtctagtattatntatcagttatctttacattcaaacttcgaggtgaagtttgttangagacaagcgaacatggttgttcatac 8451051  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttat 202  Q
    | ||| |||||||||    |||| ||||| ||| ||||||||||||    
T  8451050 tctagttagggcggccctgtcttaggctagtcaccgtattttttat 8451005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 36194626 - 36194499
Alignment:
Q  79 tattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttct 178  Q
    |||||||||||  |||| |||| ||| ||| ||| || |||||||||||||||||||||  |||||||||||||||||||||||||||| | ||||||||    
T  36194626 tattatttatcgattatctttatatttcaatttcgagatgaagtttgttaggagacaagaaaacatggttgctcatagtttagctagggtgacatgttct 36194527  T
Q  179 tgggctaatcatcgtattttttattctt 206  Q
    || |||| ||| ||||||||| ||||||    
T  36194526 tgagctagtcaccgtatttttaattctt 36194499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 37712227 - 37712331
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||| ||||| ||||||||||| |||||||||| |||||| ||||||||  |||||| | ||||||| ||||| |||||| || |||||||||||    
T  37712227 attcagaatactatgctattgtttctagtattatttatgagttatctttacattctaacttcgatgtgaagtctgttaagagacatgcaaacatggttgc 37712326  T
Q  151 tcata 155  Q
    |||||    
T  37712327 tcata 37712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 28315316 - 28315395
Alignment:
Q  106 caacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggcta 185  Q
    ||||||| ||| |||||||||||| ||| |||| |||||||||||||||| ||||||||||||||  ||||| |||||||    
T  28315316 caacttcgaggcgaagtttgttagcagataagcaaacatggttgctcatattttagctagggcggtctgttcctgggcta 28315395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 8670301 - 8670203
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtat 195  Q
    |||||||  ||||||  |||| |||||||||||| ||||| | |||||||||||||| | | |  |||||||||| ||||||||| ||| ||| |||||    
T  8670301 tttacatcccaactttgaggtaaagtttgttaggcgacaaacaaacatggttgctcacactcttactagggcggcctgttcttggactagtcaccgtat 8670203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 4275922 - 4275975
Alignment:
Q  114 aggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggg 167  Q
    ||||||||||| ||||| |||||||||  ||||||||||||| ||||| |||||    
T  4275922 aggtgaagtttattaggcgacaagcgagtatggttgctcataatttagttaggg 4275975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 26159187 - 26159240
Alignment:
Q  114 aggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggg 167  Q
    ||||||||||| |  |||||||||||||  |||| |||||||||||||||||||    
T  26159187 aggtgaagtttatacggagacaagcgaatttggtagctcatagtttagctaggg 26159240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 49951467 - 49951622
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  49951467 attcagaattctctgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 49951566  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  49951567 tcatactttagctagggcggcctgttcttgggctagtcattgtattttttattctt 49951622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 2065013 - 2065162
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  2065013 aattatatgctattgtttctagtattatttatcagttatctttacatttcaacttcaaggtgaagtttgttaggagacaaacgaacatggttgctcatac 2065112  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  2065113 tttagctagggtagcatgttcttgggctagtcaccgtattttttattctt 2065162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 44936109 - 44935966
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  44936109 aattctatgttattgtttctattattatttatcagttatctttacattccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcatag 44936010  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    |||||||| | ||||||||||||||| || ||| ||||||||||    
T  44936009 tttagctatgacggcatgttcttgggttagtcaccgtatttttt 44935966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 51259575 - 51259410
Alignment:
Q  38 tcggtccatagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaag 137  Q
    |||| |||| || ||||| |||| |||||||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  51259575 tcgggccatggtgattcagaattttatgttattgtttctagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaag 51259476  T
Q  138 cgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||||||||||||||||| |||||||||||||| | || |||||||| ||| |||||||||||||    
T  51259475 cgaacatggttgctcatagcttagctagggcggcctatttttgggctagtcaccgtattttttatt 51259410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 21321683 - 21321839
Alignment:
Q  51 attcataattctatgttattgt-ttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttg 149  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21321683 attcagaattctatgttattgtgttccaatattatttatcagttagctttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttg 21321782  T
Q  150 ctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  21321783 ctcatactttagctagggcggcctgttcttgggctagtcaccgtattttttattctt 21321839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 29655712 - 29655544
Alignment:
Q  38 tcggtccatagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaag 137  Q
    |||| |||| || ||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||| | ||||| || |||||||||||||||||||||    
T  29655712 tcgggccatggtgattcagaattctatgttattgtttctagtattatttatcagctatctttacatttccacttcgagatgaagtttgttaggagacaag 29655613  T
Q  138 cgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||||||||||||| ||||||||||||| | ||||||| ||||||||| || |||||||||||||    
T  29655612 cgaacatggttgctcatactttagctagggcgacctgttctttggctaatcaccgcattttttattctt 29655544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 51735005 - 51734850
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||    
T  51735005 attcataattctatgatattgtttctagtattatttatctgttatctttacattccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgc 51734906  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||| ||||||||||||||| | ||||| ||| ||||||    
T  51734905 tcatactttagctagggcggcctgttcttgggctaattaccgtatctttgattctt 51734850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 18442180 - 18442032
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||| |||| ||||||||    
T  18442180 attcagaattctatgctattgtttctagtattatttatcagttatctttatattccaacttcaaggtgaagtttgttatgagacaaacgaaaatggttgc 18442081  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    ||||| ||||||||||||||| ||||||||||||| ||| |||||||||    
T  18442080 tcatattttagctagggcggcctgttcttgggctagtcaccgtattttt 18442032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 37245885 - 37245737
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  37245885 attcagaattctatgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgc 37245786  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    ||||| ||||||||||||||  ||||||||||||| ||| || ||||||    
T  37245785 tcatactttagctagggcggtctgttcttgggctagtcaccgcattttt 37245737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 56065793 - 56065942
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| |||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  56065793 aattttatgctattgtttctaatattatttttcagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatag 56065892  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     |||||||||||||| | |  |||||||| ||| ||||||||||||||||    
T  56065893 cttagctagggcggcctatatttgggctagtcaccgtattttttattctt 56065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 32577081 - 32576933
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||||||  ||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  32577081 attcagaattctatgcgattgtttatagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 32576982  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    ||||| |||||||||||| || ||||||||||||| |||  ||||||||    
T  32576981 tcatactttagctagggcagcctgttcttgggctagtcactgtattttt 32576933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 41835334 - 41835189
Alignment:
Q  61 ctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagttta 160  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||| ||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  41835334 ctatgctattgtttctagtattatttatcagttatctttacattccaatttcgagatgaagtttgttaggagacaagcgaacatggttcctcatagttta 41835235  T
Q  161 gctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    | ||||||||| ||||||||||||| |||   ||||||||||||||    
T  41835234 gatagggcggcctgttcttgggctagtcactatattttttattctt 41835189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 26422642 - 26422480
Alignment:
Q  44 catagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaaca 143  Q
    |||||| ||||| |||||||||  ||||||| || ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||  | ||||    
T  26422642 catagtgattcagaattctatgcgattgtttttagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacagacaaaca 26422543  T
Q  144 tggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||||||| |||| ||| |||||| | ||||||||||| ||| ||||||||| ||||||    
T  26422542 tggttgctcatactttaactacggcggcctattcttgggctagtcaccgtatttttaattctt 26422480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 28426354 - 28426492
Alignment:
Q  68 attgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggg 167  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  28426354 attgtttctagtattatttatcagttatctttacattccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatactttagctaagg 28426453  T
Q  168 cggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     ||| || |||||||||| |||  |||||||| ||||||    
T  28426454 tggcctgctcttgggctagtcactgtatttttaattctt 28426492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 49119416 - 49119278
Alignment:
Q  68 attgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggg 167  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  49119416 attgtttctagtattatttatcagttatctttacattccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatactttagctaagg 49119317  T
Q  168 cggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     ||| || |||||||||| |||  |||||||| ||||||    
T  49119316 tggcctgctcttgggctagtcactgtatttttaattctt 49119278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 24989966 - 24989812
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||| |||||| ||||||    
T  24989966 attcaaaattctatgttat-gtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaagagacaaacgaacacggttgc 24989868  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    | ||| |||| |||||| |  ||||| ||| |||||||| |||| |||||||||||    
T  24989867 ttatactttatctagggtgatatgtttttgagctaatcaccgtactttttattctt 24989812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 23095401 - 23095523
Alignment:
Q  84 tttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggc 183  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||| |||||||||||    
T  23095401 tttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattactcatattttagctagggtggcctgttcttgggc 23095500  T
Q  184 taatcatcgtattttttattctt 206  Q
    || ||| || |||||| ||||||    
T  23095501 tagtcaccgcatttttaattctt 23095523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 28537820 - 28537669
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||| |||||||||  ||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||    
T  28537820 attcaaaattctatgctattgtttctagtattattaatcagttatcattacattccaacttcgaggtgaagtttggtagaagacaagcgaacatggttgc 28537721  T
Q  151 tcatag--tttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    ||||||  | ||||||||||||| ||| ||||| ||| ||| | ||||||||    
T  28537720 tcatagtatatagctagggcggcctgtccttggactagtcaccatatttttt 28537669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 8754490 - 8754341
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||  |||||||| || |||||||||||| |||| |||||||| ||||||| || |||||||||||| ||||||||||||||||||||||| ||     
T  8754490 aattctatactattgtttttagtattatttatcaattatctttacattccaacttcgagatgaagtttgttatgagacaagcgaacatggttgctcgtac 8754391  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||| ||||  ||||||| || || ||| ||||||||||||||||    
T  8754390 tttagatagagcggtctgttctttggatagtcaccgtattttttattctt 8754341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 47226352 - 47226210
Alignment:
Q  62 tatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttag 161  Q
    |||| ||||||||||| |||||||||||| |||| |||||||| ||||||||| ||||||  ||||||| ||||||| |||||| ||||| ||||  ||     
T  47226352 tatgctattgtttctagtattatttatcaattatctttacattccaacttcaaagtgaagaatgttaggcgacaagcaaacatgattgcttatag--taa 47226255  T
Q  162 ctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||    
T  47226254 ctagggcgacattttcttgggctaatcaccgtattttttattctt 47226210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 55735150 - 55735323
Alignment:
Q  38 tcggtccatagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggag----- 132  Q
    |||| |||| || ||||| ||||||||| ||||||||||| ||||||| ||||||||| || ||||| ||||||| |||||||||||||||||||         
T  55735150 tcggaccatggtgattcagaattctatgctattgtttctagtattattgatcagttatcttaacatttcaacttcgaggtgaagtttgttaggagacaac 55735249  T
Q  133 -acaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattct 205  Q
     |||||| || ||||||||||||||||||||||||||||  |||| |||  ||||||| | ||||||| |||||    
T  55735250 tacaagcaaatatggttgctcatagtttagctagggcggtctgtttttgatctaatcaccatatttttaattct 55735323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 43840303 - 43840203
Alignment:
Q  106 caacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattct 205  Q
    |||||| || |||||||| ||||||| |||| |||||||||||| ||||| |||| ||||||| |  ||||||||   ||||||||||||||||||||||    
T  43840303 caactttaaagtgaagttggttaggaaacaaacgaacatggttgttcatactttaactagggcagtctgttcttgaattaatcatcgtattttttattct 43840204  T
Q  206 t 206  Q
    |    
T  43840203 t 43840203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 3347351 - 3347414
Alignment:
Q  143 atggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||||| |||||||||||||| |||||| ||| ||| || |||||||||||||||||    
T  3347351 atggttgctcatattttagctagggcgggatgttcatggactagtcctcgtattttttattctt 3347414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 33582916 - 33582985
Alignment:
Q  126 ttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtat 195  Q
    ||||| ||||||||||||||| |||||| | | | |||| |||||| ||||||||||||| |||||||||    
T  33582916 ttaggcgacaagcgaacatggctgctcacactcttgctaaggcggcttgttcttgggctagtcatcgtat 33582985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 51364696 - 51364644
Alignment:
Q  116 gtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggc 168  Q
    |||||||||||||| |||||| |||| || |||||||||| ||||||||||||    
T  51364696 gtgaagtttgttagaagacaaacgaatattgttgctcatactttagctagggc 51364644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 5609493 - 5609648
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5609493 attcagaattctatgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 5609592  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||  |||||||||||||||||||||||||||| |||  |||||||||||||||    
T  5609593 tcatacattagctagggcggcatgttcttgggctagtcactgtattttttattctt 5609648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 4395312 - 4395467
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||  |||||||| || ||||||||||||||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  4395312 attcagaattctatcctattgtttatagtattatttatcagttatctttacatttcaactttgaggtgaagtttgttaggagacaagcgaacatggttgc 4395411  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  4395412 tcatactttagctagggcggcctgttcttgggctagtcaccgtattttttattctt 4395467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 48949751 - 48949602
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| ||||||||||| |||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  48949751 aattttatgctattgtttctagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcatag 48949652  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     ||||||||||| || ||||||||||||| ||| ||||||||||||||||    
T  48949651 cttagctagggcagcctgttcttgggctagtcaccgtattttttattctt 48949602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 36733850 - 36733999
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||         
T  36733850 attcataattctatgttattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttacgagacaagcgaacatg----- 36733944  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     |||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  36733945 -catactttagctagggcggcctgttcttgggctagtcatcgtatttttaattctt 36733999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 44527413 - 44527556
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| ||||||||||| ||||| |||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||     
T  44527413 aattctatgctattgtttctagtattaattattagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatac 44527512  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    |||| |||||||||| |||||||||| |||||| ||||||||||    
T  44527513 tttaactagggcggcctgttcttgggttaatcaccgtatttttt 44527556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 51113480 - 51113624
Alignment:
Q  62 tatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttag 161  Q
    |||| ||||||||||| |||||||| |||||||| || ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  51113480 tatgctattgtttctagtattatttttcagttatcttaacattccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttag 51113579  T
Q  162 ctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||| | |||||||||| || ||| ||||||||||||||||    
T  51113580 ctagggcgacctgttcttgggttagtcaccgtattttttattctt 51113624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 25682811 - 25682958
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||  ||||||||||| |||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||     
T  25682811 aattctatactattgtttctagtattatttttcagttatctttacattctaacttcaaggtgaagtttgttaggagacaagcgagcatggttgctcatac 25682910  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattc 204  Q
    ||||||||||| |||||||||||||| || ||| |||| |||| ||||    
T  25682911 tttagctagggaggcatgttcttgggttagtcaccgtacttttaattc 25682958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 16816824 - 16816679
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||| | ||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||     
T  16816824 aattctacgctattgtttctagtattatttatcagttatctttacattccaactttaaggtgaagtttgttaggagagaagagaacatggttgctcatac 16816725  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttat 202  Q
    ||||| ||||||| | | ||||||||||| ||| ||||||||||||    
T  16816724 tttagttagggcgacttattcttgggctagtcaccgtattttttat 16816679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 44602906 - 44603056
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||    
T  44602906 attcaaaattctatgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggggacaagcgaacatggtggc 44603005  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| |     ||||||||| ||||||||||||| ||| | ||||||||||||||    
T  44603006 tcatact-----tagggcggcctgttcttgggctagtcaccatattttttattctt 44603056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 52109613 - 52109762
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||||  ||||||||||| |||||||||| ||||||| | ||||| |||| |||||     
T  52109613 aattctatgttattgtttctagtattagttatcagttatctttacattctaacttcaaggtaaagtttgttatgagacaaacaaacatagttgttcatac 52109712  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||| ||||||||||| ||| ||| ||||||||| ||||||    
T  52109713 tttagatagggcgacatgttcttggactagtcaccgtatttttaattctt 52109762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 14485183 - 14485319
Alignment:
Q  70 tgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcg 169  Q
    ||||| || |||| |||||||||||| |||||||| |||||| |||||||||||  ||||||||||| ||||||| |||||||||| |||||||||||||    
T  14485183 tgtttttagtattgtttatcagttatttttacattccaactttaaggtgaagttcattaggagacaaacgaacatagttgctcatactttagctagggcg 14485282  T
Q  170 gcatgttcttgggctaatcatcgtattttttattctt 206  Q
    || |||||||| |||| | ||| ||||||||||||||    
T  14485283 gcttgttcttgagctagtaatcatattttttattctt 14485319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 200
Target Start/End: Original strand, 2885388 - 2885529
Alignment:
Q  62 tatgttattgtttctaatattatttatcagtta----tgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagt 157  Q
    |||| ||||||||||| ||||||||||||||||    | |||||||| |||||||  ||||||||||||||||| ||||||||||||| ||||||||| |    
T  2885388 tatgctattgtttctagtattatttatcagttaattatctttacatttcaacttcgtggtgaagtttgttaggatacaagcgaacatg-ttgctcatact 2885486  T
Q  158 ttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    |||||||||||| | ||||||||||||| ||| ||||||||||    
T  2885487 ttagctagggcgacctgttcttgggctagtcaccgtatttttt 2885529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 21031309 - 21031458
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||||||| ||||||| |||||||||||| |||| |||||||   |||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  21031309 aattttatgttatagtttctagtattatttatcaattatctttacatcctaacttcgaggtgaagttttttaggagacaagcgaacatgattgctcatag 21031408  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||| ||||| || |||| ||||| || | | ||||| ||||||||||    
T  21031409 tttagccagggcagcctgtttttgggttagttaccgtatgttttattctt 21031458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 17371648 - 17371750
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtatt 196  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||  ||||||||||||||||||||||| |||| ||| ||||||    
T  17371648 tttacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcataccttagctagggcggcatgttcttgagctagtcaccgtatt 17371747  T
Q  197 ttt 199  Q
    |||    
T  17371748 ttt 17371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 24538634 - 24538790
Alignment:
Q  44 catagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaaca 143  Q
    |||||| ||||| ||||||| | |||| |||||| ||||||||||| ||||| ||||||||  |||||  |||||||||| ||||||| |||||||||||    
T  24538634 catagtgattcagaattctacgctattatttctagtattatttatctgttatctttacattctaactttgaggtgaagttcgttaggaaacaagcgaaca 24538733  T
Q  144 tggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    || ||||||||| ||| |||||| |  ||||||||| ||||| ||| | ||||||||    
T  24538734 tgattgctcatacttttgctaggacaacatgttcttcggctagtcaccatatttttt 24538790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 5594266 - 5594343
Alignment:
Q  129 ggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||| ||||||||||||||||    
T  5594266 ggagacaagcgaacatggttgctcatactttaactaggacggcatgttcttggactaatcaccgtattttttattctt 5594343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 48166412 - 48166525
Alignment:
Q  82 tatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgg 181  Q
    |||||||| ||||| |||||||| |||||||||| ||||||||||||||| |||| |||||||| |||||| || |||| |||| ||||| |  ||||||    
T  48166412 tatttatctgttatctttacatttcaacttcaagatgaagtttgttaggaaacaaacgaacatgattgctcgtactttaactagagcggcctactcttgg 48166511  T
Q  182 gctaatcatcgtat 195  Q
    |||| ||| |||||    
T  48166512 gctagtcaccgtat 48166525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 38679116 - 38679050
Alignment:
Q  64 tgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttagg 130  Q
    ||||||||||||||||||||||||| || ||  |||||||| ||||||||||||||||||| |||||    
T  38679116 tgttattgtttctaatattatttataaggtagctttacattccaacttcaaggtgaagtttattagg 38679050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 4898619 - 4898524
Alignment:
Q  85 ttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttg 180  Q
    ||||||||| | |||||||| ||||||| | || |||||||||||||||||| |||| ||| ||||||||| ||||| |||| || | ||||||||    
T  4898619 ttatcagttgtctttacatttcaacttcgatgtaaagtttgttaggagacaaacgaatatgattgctcatactttagttaggccgacctgttcttg 4898524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 23332583 - 23332698
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| ||||||||||||| || |||||||| | |||||| |||   || | |||| ||| |||| |||||||| |||||||||| |||||||||    
T  23332583 attcaaaattgtatgttattgtttttattattatttgtgagttatctttgtttttctactttaagatgaaatttgttagaagacaagcgagcatggttgc 23332682  T
Q  151 tcatagtttagctagg 166  Q
    ||||| || |||||||    
T  23332683 tcatacttgagctagg 23332698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 23163360 - 23163418
Alignment:
Q  106 caacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagcta 164  Q
    ||||||| || | ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  23163360 caacttcgagataaagtttgttagaagacaagcgaacatggttgctcatactttagcta 23163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 16732087 - 16732242
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  16732087 attcagaattctctgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 16732186  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  16732187 tcatactttagctagggcggactgttcttgggctagtcaccgtattttttattctt 16732242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 17710221 - 17710376
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  17710221 attcagaattctctgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 17710320  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  17710321 tcatactttagctagggcggactgttcttgggctagtcaccgtattttttattctt 17710376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 29200988 - 29200833
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  29200988 attcagaattctatgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgc 29200889  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||  ||||||||||||| |||  |||||||||||||||    
T  29200888 tcatactttagctagggcggtctgttcttgggctagtcactgtattttttattctt 29200833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 16098644 - 16098793
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  16098644 attcagaattctatgatattgtttctagtattagttatcagttatctttacattccaacttcaaggtgaagtttgttatgagacaagcgaacatggttgc 16098743  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    ||||| ||||||||||||||| ||||| || |||| ||| ||||||||||    
T  16098744 tcatattttagctagggcggcctgttcatgagctagtcaccgtatttttt 16098793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 17877552 - 17877704
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| ||| ||| ||||||||||||||| ||||||||||| |||||||||    
T  17877552 attcgtaattctatgctattgtttctagtattatttatcagttatctttacatttcaatttcgaggtgaagtttgttatgagacaagcgaccatggttgc 17877651  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||| ||||| |||| ||||||||| |||||||| ||| |||||||||||||    
T  17877652 tcatactttaggtaggacggcatgttattgggctagtcaccgtattttttatt 17877704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 3601806 - 3601961
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||| ||||||||||| ||||||||||||||||| ||||||||  || ||| ||||||||||||||||||||||| |||||||||||||    
T  3601806 attcagaattttatgctattgtttctagtattatttatcagttatctttacattctaaattcgaggtgaagtttgttaggagacaatcgaacatggttgc 3601905  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||||||||||||  |||| |||||||  ||| ||||||||||||||||    
T  3601906 tcatagtttagctagggcgggctgttgttgggcttgtcaccgtattttttattctt 3601961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 24251621 - 24251748
Alignment:
Q  79 tattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttct 178  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  24251621 tattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttct 24251720  T
Q  179 tgggctaatcatcgtattttttattctt 206  Q
    || |||| ||| ||||||||| ||||||    
T  24251721 tgagctagtcaccgtatttttaattctt 24251748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 44481269 - 44481396
Alignment:
Q  79 tattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttct 178  Q
    ||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  44481269 tattatttaccagttatctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttct 44481368  T
Q  179 tgggctaatcatcgtattttttattctt 206  Q
    ||||||| ||| | ||||||||||||||    
T  44481369 tgggctagtcaccatattttttattctt 44481396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 22289395 - 22289547
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||| ||||||||||| |||||||| |||||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  22289395 attcagaattttatgctattgtttctagtattatttttcagttatctttacattccaacttcgaggtgatgtttgttaggagacaagcgaacatggttgc 22289494  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    |||||| |||||||||||||| ||||||||  ||| | | |||||||||||||    
T  22289495 tcatagcttagctagggcggcctgttcttgaactagttaccgtattttttatt 22289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 30493656 - 30493488
Alignment:
Q  38 tcggtccatagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaag 137  Q
    |||| |||| || ||||| |||| |||| |||||||| || ||||||||||||||||| |||||||| ||||||||  |||||||||||||||||||||     
T  30493656 tcgggccatggtgattcagaattttatgctattgtttatagtattatttatcagttatctttacatttcaacttcatagtgaagtttgttaggagacaac 30493557  T
Q  138 cgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    | |||||||||| ||||| ||||||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  30493556 caaacatggttgttcatactttagctagggcggtctgttcttgggctagtcaccgtattttttattctt 30493488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 9328638 - 9328487
Alignment:
Q  48 gtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggt 147  Q
    |||||||| |||||||||   ||||||||| ||||||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  9328638 gtaattcagaattctatgcgtttgtttctagtattatttatcagttatctttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggt 9328539  T
Q  148 tgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    |||||||| |||||||| | || | | ||||||||||| ||| |||||||||    
T  9328538 tgctcatactttagctacgacgtcctattcttgggctagtcaccgtattttt 9328487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 1581776 - 1581926
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacat-ggttgctcata 155  Q
    |||||||||  ||||||| |||||||||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||| || ||||||||    
T  1581776 aattctatgccattgtttataatattatttatcagttatctttacatttcaacttcgatgtgaagtttgttaggagacaagcgaacatggggtgctcata 1581875  T
Q  156 gtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||| || ||| | || |||||||| ||| ||||||||||||||||    
T  1581876 gtttagctaaggaggcttatttttgggctagtcaccgtattttttattctt 1581926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 3275188 - 3275337
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    |||||||||| |||| |||||||| || |||||||| |||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||     
T  3275188 attcataattttatgctattgtttttagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatggttga 3275287  T
Q  151 tcatag-tttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    |||||| || |||||||||||| ||||||| ||||| ||| |||||||||    
T  3275288 tcatagcttaagctagggcggcctgttcttaggctagtcaccgtattttt 3275337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 24139221 - 24139320
Alignment:
Q  107 aacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| || |||||||||||||    
T  24139221 aacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgcattttttattctt 24139320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 33224565 - 33224438
Alignment:
Q  79 tattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttct 178  Q
    |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||| || ||||||    
T  33224565 tattatttttcagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatgattgctcataacttatctagggcagcctgttct 33224466  T
Q  179 tgggctaatcatcgtattttttattctt 206  Q
    ||||||| ||| ||||||||| ||||||    
T  33224465 tgggctagtcaccgtatttttgattctt 33224438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 30824527 - 30824373
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||  | |||||||||||||||||| ||||||||||||||||    
T  30824527 attcagaattctatgttattgtttctagtcttatttatcagttatctttacattccaactttgaagtgaagtttgttaggagataagcgaacatggttgc 30824428  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||  |||  || || ||  ||||||||||||| ||| | ||||||||||||||    
T  30824427 tcataccttaatta-ggtggtctgttcttgggctagtcaccatattttttattctt 30824373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 47580039 - 47580177
Alignment:
Q  61 ctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagttta 160  Q
    ||||| |||||  |||| ||||||||||||||||| |||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||  || |    
T  47580039 ctatgctattggatctagtattatttatcagttatctttatattccaacttcgaggtgaagtttggtaggagacaagcgaacatggttgctcattcttca 47580138  T
Q  161 gctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    | || | |||| ||||||||||||| ||| |||||||||    
T  47580139 gttaagacggcctgttcttgggctagtcaccgtattttt 47580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 35013759 - 35013831
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcg 169  Q
    |||||||| ||| |||||| |||||||| ||||||||||||| || ||||| |||| || |||||||||||||    
T  35013759 tttacattccaatttcaagttgaagtttattaggagacaagcaaatatggtcgctcgtactttagctagggcg 35013831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 6056347 - 6056280
Alignment:
Q  114 aggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgg 181  Q
    |||||||||||||| || | |||||||||||||||| |||||   | |||||||||||||||||||||    
T  6056347 aggtgaagtttgttgggcgtcaagcgaacatggttgttcatacgattgctagggcggcatgttcttgg 6056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 35030641 - 35030573
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctag 165  Q
    |||||||| ||||||  ||||||||||||  | |||||||||||||||  ||||||||| |||||||||    
T  35030641 tttacattccaactttgaggtgaagtttgcgaagagacaagcgaacataattgctcatactttagctag 35030573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 88713 - 88868
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||| | ||||||||||||||||  |||||||| ||||||||| ||||||||| || ||||||||||||||||||||||    
T  88713 attcagaattctatgctattgtttccagtattatttatcagttagctttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgc 88812  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  88813 tcatactttagctagggcggcctgttcttgggctagtcaccgtattttttattctt 88868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 18344321 - 18344176
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||     
T  18344321 aattctatgatattgtttctagtattaattatcagttatctttacattccaacttcaaggtgaaatttgttaggagataagcgaacatggttgctcatac 18344222  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttat 202  Q
    ||||||||||||||| |||| || | ||||||||||||||||||||    
T  18344221 tttagctagggcggcctgttgttagactaatcatcgtattttttat 18344176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 9710106 - 9710257
Alignment:
Q  48 gtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggt 147  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  9710106 gtaattcataattctatgcaattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggt 9710205  T
Q  148 tgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    |||||||| |||||||| | |||  ||||||||||||| | | |||||||||    
T  9710206 tgctcatactttagctaagacggtctgttcttgggctagtaaccgtattttt 9710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 11292096 - 11291942
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| ||||||||||||| || ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  11292096 attcaaaattttatgttattgtttatagtattatttatcagttatctatacatt-caacttcaaggtgaagtttgttaggagacgagcgaacatgtttgc 11291998  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| |||||||||| |||| ||||||||||||| ||| ||||||||||||||||    
T  11291997 tcatactttagctaggtcggcttgttcttgggctagtcaccgtattttttattctt 11291942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 34695937 - 34695782
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||| ||||||||||| ||| ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  34695937 attcagaattttatgctattgtttctagtataatttaccagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 34695838  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||| ||||||||||||  ||| || |||||||||||||    
T  34695837 tcatactttagctagggcggcttgttcttgggcttgtcaccgcattttttattctt 34695782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 34718349 - 34718194
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||| ||||||||||| ||| ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  34718349 attcagaattttatgctattgtttctagtataatttaccagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 34718250  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||||||| ||||||||||||  ||| || |||||||||||||    
T  34718249 tcatactttagctagggcggcttgttcttgggcttgtcaccgcattttttattctt 34718194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 35158878 - 35158721
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaagg--tgaagtttgttaggagacaagcgaacatggtt 148  Q
    ||||| ||||||||| ||||||||||| |||||||||||| |||| |||||||| |||||||||||  |||||||||||| ||||||||||||||| |||    
T  35158878 attcagaattctatgctattgtttctattattatttatcaattatttttacattccaacttcaaggcatgaagtttgttatgagacaagcgaacatagtt 35158779  T
Q  149 gctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||| ||||||||||| |||||||||||||  || ||||||||||||||||    
T  35158778 gctcatagtttcgctagggcggcctgttcttgggctaggcaccgtattttttattctt 35158721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 12130671 - 12130516
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| |||| |||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  12130671 attcagaattctatgctattatttctagtattatttatcagttatatttacattccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgc 12130572  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||||||||  ||| | |||||| |||| | | ||||||||||||||||    
T  12130571 tcatactttagctaggagggcctattcttgagctagttaccgtattttttattctt 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 26198842 - 26198991
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||  |||||||||||||||||  ||||| |||||||||| ||||||     
T  26198842 aattctatgctattgtttctagtattatttaccagttatctttacatttcaactttgaggtgaagtttgttaggtaacaagtgaacatggtttctcatac 26198941  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||| | | | |||||| |||| ||| || |||||||||||||    
T  26198942 tttagctagggtgacttcttcttgagctagtcaccgcattttttattctt 26198991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 1418014 - 1417875
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||| |||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||              
T  1418014 attcagaattctatgctattgtttctagtattatttatcaattatctttacattccaacttcgaggtgaagtttgttaggagacaagcga---------- 1417925  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtatttttt 200  Q
    |||||||||||||||||| |  ||||||||||||| ||| ||||||||||    
T  1417924 tcatagtttagctagggcaggctgttcttgggctagtcaccgtatttttt 1417875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 25552315 - 25552454
Alignment:
Q  67 tattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagg 166  Q
    |||| |||||||||||||||||||||||| |||||||| ||| || ||| |||| ||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  25552315 tattatttctaatattatttatcagttatttttacatttcaattttaagatgaaatttgttaagagacaagtgaacatggttgctcatactttagttagg 25552414  T
Q  167 gcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
      | | ||||||| || || ||| ||||||||||||||||    
T  25552415 aagacctgttcttaggttagtcaccgtattttttattctt 25552454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 14827240 - 14827388
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| |||| ||| ||||||||| ||| |||||| |||||||| ||||||| |||| ||||| |||| || |||| ||||||||||||||||||     
T  14827240 aattctatgctattatttataatattatgtattagttatctttacattccaacttcgaggtaaagttagttaaga-acaaacgaacatggttgctcatac 14827338  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||| |||||||| ||| ||||||||||| ||| || ||||| |||||||    
T  14827339 tttatctagggcgacatattcttgggctagtcaccgcattttctattctt 14827388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 13109886 - 13109777
Alignment:
Q  67 tattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagg 166  Q
    ||||||||| | ||||||||||||||||| |||||||| |||| |  ||||||||||||| ||||||||| ||||||| |||| ||||| ||||||||||    
T  13109886 tattgtttccagtattatttatcagttatctttacattccaacgttgaggtgaagtttgtcaggagacaaacgaacatagttgttcatactttagctagg 13109787  T
Q  167 gcggcatgtt 176  Q
    ||| ||||||    
T  13109786 gcgacatgtt 13109777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 22845735 - 22845832
Alignment:
Q  106 caacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattct 205  Q
    ||||||||| |||||||||||||||| ||||||||||||  ||||||||| ||||||||||||| | |||||||  |||| ||| | |||||||||||||    
T  22845735 caacttcaatgtgaagtttgttagga-acaagcgaacat--ttgctcatactttagctagggcgacctgttcttaagctagtcaccatattttttattct 22845831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 44017334 - 44017229
Alignment:
Q  68 attgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctaggg 167  Q
    |||||||||  ||||||||||||||||| ||| ||||  |||||| |  |||||| ||||||||||||||  ||||| |||||||||| |||| ||||||    
T  44017334 attgtttcttgtattatttatcagttatcttttcattctaacttcgatatgaagtgtgttaggagacaagtaaacatagttgctcatactttaactaggg 44017235  T
Q  168 cggcat 173  Q
    ||||||    
T  44017234 cggcat 44017229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 36445544 - 36445449
Alignment:
Q  59 ttctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcat 154  Q
    |||| |||| |||||||| ||||||||| ||| || | |||||||| ||||||| ||||||||||| |||    |||| ||||||| |||||||||    
T  36445544 ttctttgttgttgtttctcatattatttttcaattctctttacattccaacttcgaggtgaagtttattaaacaacaaacgaacatagttgctcat 36445449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 10244580 - 10244492
Alignment:
Q  74 tctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagc 162  Q
    |||| |||||||| | |||||  |||| ||| ||||||| ||||||||||| ||| | | |||| ||||||| ||||||||| ||||||    
T  10244580 tctagtattatttctgagttagctttagattccaacttcgaggtgaagtttattaagcggcaagtgaacatgattgctcatactttagc 10244492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 34497399 - 34497253
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| ||||||| ||| |||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34497399 aattttatgctattgttcctagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatag 34497300  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
     |||||||||||||| ||||||||||||| ||| |||||||||||||    
T  34497299 cttagctagggcggcctgttcttgggctagtcaccgtattttttatt 34497253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 57 - 203
Target Start/End: Original strand, 53497192 - 53497338
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||     
T  53497192 aattctatgctattgtttctagtattaattatcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatac 53497291  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    |||||||||||| || ||||||||||||| ||| |||||||||||||    
T  53497292 tttagctagggcagcctgttcttgggctagtcaccgtattttttatt 53497338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 27608930 - 27608781
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| ||||||||||| |||||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  27608930 aattttatgctattgtttctagtattatttttcagttatctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcatag 27608831  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     |||||||| ||||| ||||||||||||| ||| ||||||||||||||||    
T  27608830 cttagctagagcggcctgttcttgggctagtcaccgtattttttattctt 27608781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 42340310 - 42340162
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  42340310 attcagaattctatgctattgtttctaatattatttatcagctatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgc 42340211  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttt 199  Q
    ||| | ||||| ||||||||| ||||||| ||||| ||| |||||||||    
T  42340210 tcacactttagatagggcggcctgttctttggctagtcaccgtattttt 42340162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 2121235 - 2121390
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    |||||||||| | || ||||||||||| ||||||||||||||||| |||||||  ||||||| |||| ||||||||||||||||||||||||||||||||    
T  2121235 attcataattttgtgctattgtttctagtattatttatcagttatctttacatctcaacttcgaggtaaagtttgttaggagacaagcgaacatggttgc 2121334  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| ||||| ||||||||  |||||||||| || | | ||||||||||||||||    
T  2121335 tcatactttagttagggcggtctgttcttgggttagttaccgtattttttattctt 2121390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 55199671 - 55199820
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| ||||||||||| |||||||| ||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55199671 aattttatgctattgtttctagtattatttttcagtcatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatag 55199770  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     ||||||| |||||| |||||||| |||| | | | ||||||||||||||    
T  55199771 cttagctacggcggcctgttcttgcgctagtgaccatattttttattctt 55199820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 2615637 - 2615789
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||| || || |||||||||||||||||||| |||||||||||||    
T  2615637 attcagaattctatgatattgtttttagtattatttatcagttatttttacattccaacctcgagatgaagtttgttaggagacaaacgaacatggttgc 2615736  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||| |||| |||||||| | ||||||||||||| ||| |||| ||||||||    
T  2615737 tcatactttaactagggcgacctgttcttgggctagtcaccgtaatttttatt 2615789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 26046864 - 26046997
Alignment:
Q  73 ttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggca 172  Q
    ||||| ||||||||||||||||| ||||||||  |||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  26046864 ttctagtattatttatcagttatctttacattctaactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatactttagctagggcggct 26046963  T
Q  173 tgttcttgggctaatcatcgtattttttattctt 206  Q
    | ||||||||||| ||| ||||||||| ||||||    
T  26046964 tattcttgggctagtcaccgtatttttaattctt 26046997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 31341742 - 31341603
Alignment:
Q  67 tattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagg 166  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |  |||||||||||||||  |||| ||||    
T  31341742 tattgtttctaatattatttatcagttatctttacattccaacttcaaggtgaagtttattaggagacaaactgacatggttgctcataccttagttagg 31341643  T
Q  167 gcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    || ||  |||||||||||| ||| ||||||||| ||||||    
T  31341642 gcagccggttcttgggctagtcaccgtatttttgattctt 31341603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 647168 - 647055
Alignment:
Q  86 tatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggcta 185  Q
    |||||||||| |||||||| ||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||| |||    
T  647168 tatcagttatctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatactttagttagggcggcctgttcttggacta 647069  T
Q  186 atcatcgtattttt 199  Q
    |||| |||||||||    
T  647068 atcaccgtattttt 647055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 55213485 - 55213634
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| |||||||| |  |||||| |||||||||| ||||| || ||||||| ||||||| |||||||||||| ||||||||||||||||| |||     
T  55213485 aattctatgctattgtttttggtattatatatcagttatctttacgttccaacttcgaggtgaaatttgttaggagaaaagcgaacatggttgcttatac 55213584  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||| ||||||||||  |||||||||||| |||  |||||||||||||||    
T  55213585 tttaactagggcggccggttcttgggctagtcactgtattttttattctt 55213634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 27747718 - 27747603
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||| |||||||| || |||||||| |||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  27747718 attcaaaattctatgctattgtttttagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatagttgc 27747619  T
Q  151 tcatagtttagctagg 166  Q
    ||||| |||| |||||    
T  27747618 tcatactttatctagg 27747603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 19117747 - 19117598
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| |||||||| || |||||||| |||||||| ||| |||| ||| ||  ||||||||||||||||||||||  ||||||| |||||||||||    
T  19117747 aattttatgctattgtttttagtattatttttcagttatttttgcattccaaatttgaggtgaagtttgttaggagacagtcgaacatagttgctcatag 19117648  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     ||||||||| |||| ||||||| ||||| ||| ||||||||| ||||||    
T  19117647 cttagctaggtcggcctgttcttaggctagtcaccgtatttttgattctt 19117598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 11020213 - 11020058
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||| || ||||||||||| |||||||||||| |||| |||||||| |||| || | |||||||||||| ||||||||||||||||||||      
T  11020213 attcagaattctgtgctattgtttctagtattatttatcaattatctttacatttcaacctcgatgtgaagtttgtttggagacaagcgaacatggttaa 11020114  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||| |||||||||| |  | | | ||||||||| |||  |||||||||||||||    
T  11020113 tcatattttagctaggacaacctatccttgggctagtcactgtattttttattctt 11020058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 46007459 - 46007599
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| |||||||||||  |||||||||||||||| ||||||||  || || | ||| ||||||||||| ||||||  ||||||| |||||||||     
T  46007459 aattttatgctattgtttctagcattatttatcagttatttttacattctaattttagggtaaagtttgttagaagacaaatgaacatgattgctcatac 46007558  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattt 197  Q
    |||| |||||||||||| |||||  |||||||| |||||||    
T  46007559 tttaactagggcggcatcttcttaagctaatcaccgtattt 46007599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 1702916 - 1702806
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||||||| ||||| ||| || |||||||||  |||||| ||||||||  ||||||||||||||||||||||| ||||||||||| ||| || ||||||     
T  1702916 aattctattttattatttttagtattatttactagttatctttacattcgaacttcaaggtgaagtttgttagaagacaagcgaatatgattactcatac 1702817  T
Q  157 tttagctaggg 167  Q
    |||| ||||||    
T  1702816 tttaactaggg 1702806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 48227568 - 48227674
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtatt 196  Q
    |||||||| ||||||| ||||||| ||||||||||||||||| || |||||| |||||| ||||||||||||| | |||||||||| || ||  | ||||    
T  48227568 tttacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagctagggcgacttgttcttgggttattcgccatatt 48227667  T
Q  197 ttttatt 203  Q
    |||||||    
T  48227668 ttttatt 48227674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 24176930 - 24176999
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgt 126  Q
    ||||||| | |||||| |||| |||||||||| |||||| |||||||| ||||||| |||||||||||||    
T  24176930 aattctaagctattgtatctagtattatttataagttatctttacattccaacttcgaggtgaagtttgt 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 18720856 - 18720930
Alignment:
Q  114 aggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatc 188  Q
    |||||||||||||||||   |||| | |||||||||||||||   | |||| |||||||||||||||| ||||||    
T  18720856 aggtgaagtttgttaggcatcaagtgcacatggttgctcatacgattgctatggcggcatgttcttggcctaatc 18720930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 49525181 - 49525079
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggctaatcatcgtatt 196  Q
    |||||||| ||| ||  |||| |||||||||||| ||||||||||||||| |||||| |   | ||||||||||  ||||||||| ||| ||| | ||||    
T  49525181 tttacattccaattttgaggtaaagtttgttaggcgacaagcgaacatggctgctcacacccttgctagggcggtctgttcttggactagtcaccatatt 49525082  T
Q  197 ttt 199  Q
    |||    
T  49525081 ttt 49525079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 34104498 - 34104343
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||| |||| |||||||| || |||||||| |||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  34104498 attcagaattttatgctattgtttttagtattatttttcagttatctttacattcgaacttcgaggtgaagtttgttaggagacaagcaaacatggttgc 34104399  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  34104398 tcatagcttagctatggcggcatgttcttgggctagtcaccgtattttttattctt 34104343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 14680316 - 14680468
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| |||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  14680316 attcaaaattctctgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacatgcgaacatggttgc 14680415  T
Q  151 tcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||||| |||| |||||||||| ||||||  ||||| ||| |||||||||||||    
T  14680416 tcatactttaactagggcggcctgttctcaggctagtcaccgtattttttatt 14680468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 11731694 - 11731547
Alignment:
Q  59 ttctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtt 158  Q
    ||||||| || |||||||| || |||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||    
T  11731694 ttctatgctactgtttctagtaatatttatcagttatctttacattccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatactt 11731595  T
Q  159 tagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||||| || || |||||||||| ||| | ||||||||||||||    
T  11731594 tagctagggcagcctgctcttgggctagtcaccatattttttattctt 11731547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 15606017 - 15605872
Alignment:
Q  61 ctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagttta 160  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||| |||||||| ||||||||||||||||||||||||  ||||    
T  15606017 ctatgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaattttgttagcagacaagcgaacatggttgctcatgcttta 15605918  T
Q  161 gctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    ||||||||||| | ||||||||||| ||| | ||||| ||||||||    
T  15605917 gctagggcggcttattcttgggctagtcaccatatttattattctt 15605872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 21944664 - 21944506
Alignment:
Q  48 gtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggt 147  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||||| |||| ||| ||||||| | |||||||||||||  |||||||||| ||| ||    
T  21944664 gtaattcagaattctatgctattgtttctagtattatttatcagttatttttatattccaacttcgatgtgaagtttgttaaaagacaagcgatcattgt 21944565  T
Q  148 tgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||| ||||| ||| || ||| ||||||| |||| ||| ||||||||||||||||    
T  21944564 tgctcatactttagttagagcagcaggttcttgtgctagtcaccgtattttttattctt 21944506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 28107293 - 28107424
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgc 150  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||| || || ||||||||||||||||| | |||||||||||    
T  28107293 attcagaattctatgttattgtttctagtattatttattagttatctttacattccaacttcgagctgtagtttgttaggagacaaccaaacatggttgc 28107392  T
Q  151 tcatagtttagctagggcggcatgttcttggg 182  Q
    ||||| ||||||||||||  | ||||||||||    
T  28107393 tcatactttagctagggcaacttgttcttggg 28107424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 19690906 - 19690760
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||||  |||||  |||||||||||||||||| ||||||||||||| ||||||||      
T  19690906 aattctatgtcattgtttctagtattatttatcagttatctttacatttaaactttgaggtgaagtttgttaggaaacaagcgaacatgattgctcatgt 19690807  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttatt 203  Q
    ||| || |||||| | ||||||||||||| |||  ||||||||||||    
T  19690806 ttttgcaagggcgacctgttcttgggctagtcactgtattttttatt 19690760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 51 - 204
Target Start/End: Original strand, 27443084 - 27443240
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattaca---acttcaaggtgaagtttgttaggagacaagcgaacatggt 147  Q
    ||||| |||| |||| ||||||||||| |||||| | |||||||| |||||||| ||   ||||  |||||||||||||||||||| |||||||||||||    
T  27443084 attcagaattttatgctattgtttctagtattatatttcagttatctttacattccaccaactttgaggtgaagtttgttaggagagaagcgaacatggt 27443183  T
Q  148 tgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattc 204  Q
    ||||||||| |||||||||||||  ||||||||||||| |||  |||||||| ||||    
T  27443184 tgctcatagcttagctagggcggtctgttcttgggctagtcactgtatttttgattc 27443240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 15053202 - 15053053
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    ||||||||| | ||| || ||||||||||||||| |||| |||||||| ||| ||| |||||||||||||||| |||||||| |||||| |||||||||     
T  15053202 aattctatgctgttgcttataatattatttatcaattatatttacattccaatttcgaggtgaagtttgttagaagacaagcaaacatgattgctcatac 15053103  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||||||||| || ||||| | || |||||| ||||||||| ||||||    
T  15053102 tttagctagggcagcctgttcctaggttaatcaccgtatttttaattctt 15053053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 29368096 - 29367960
Alignment:
Q  44 catagtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaaca 143  Q
    |||||| |||| |||||||||| ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||| ||||||||||||| |||||||||||    
T  29368096 catagtgattcgtaattctatgctattgcttctagtattagttatcagttatctttaccttccaacttcaaggtaaagtttgttaggaaacaagcgaaca 29367997  T
Q  144 tggttgctcata-gtttagctagggcggcatgttctt 179  Q
    | |||  |||||  ||||| ||||||| |||||||||    
T  29367996 tagttattcatacttttagttagggcgacatgttctt 29367960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 3100415 - 3100529
Alignment:
Q  67 tattgtttctaatattatttatcagttatgttt-acattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctag 165  Q
    |||||||| || ||||||||||||||||| ||| ||||| ||||||  ||||||||||||||||||||||||||||||    || ||||| |||||||||    
T  3100415 tattgtttatagtattatttatcagttatcttttacattccaactttgaggtgaagtttgttaggagacaagcgaaca----tgatcatactttagctag 3100510  T
Q  166 ggcggcatgttcttgggct 184  Q
    || || |||||||||||||    
T  3100511 ggtggtatgttcttgggct 3100529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 5542589 - 5542651
Alignment:
Q  119 aagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgg 181  Q
    ||||||| |||| ||||||||||||||||||||||||   | ||||||||||||| |||||||    
T  5542589 aagtttgctaggcgacaagcgaacatggttgctcatacacttgctagggcggcatattcttgg 5542651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 30802018 - 30801984
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcag 91  Q
    ||||||||||||||||||||| |||||||||||||    
T  30802018 aattctatgttattgtttctagtattatttatcag 30801984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 350 - 499
Alignment:
Q  57 aattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatag 156  Q
    |||| |||| |||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  350 aattttatgctattgtttctaatattatttttcagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatag 449  T
Q  157 tttagctagggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
     |||||||||||||| | |  |||||||| ||| ||||||||||||||||    
T  450 cttagctagggcggcctatatttgggctagtcaccgtattttttattctt 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 201
Target Start/End: Complemental strand, 300 - 147
Alignment:
Q  48 gtaattcataattctatgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggt 147  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||  ||||||| ||||||| | |||||||||||||||||||||||||||| |||    
T  300 gtaattcagaattctatgctattgtttctagtattatttatcagttatccttacattccaacttcgatgtgaagtttgttaggagacaagcgaacacggt 201  T
Q  148 tgctcatagtttagctagggcggcatgttcttgggctaatcatcgtatttttta 201  Q
    |||||||| |||| ||||| || | ||||||||||||| ||| |||||||||||    
T  200 tgctcatactttaactaggacgacttgttcttgggctagtcaccgtatttttta 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 20325 - 20467
Alignment:
Q  64 tgttattgtttctaatattatttatcagttatgtttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagct 163  Q
    |||| ||||||||| ||||||||||||||||| |||||||  ||||||  |||||||||||||||||||||||||||| ||| || |||||| |||||||    
T  20325 tgtttttgtttctagtattatttatcagttatctttacatgtcaactttgaggtgaagtttgttaggagacaagcgaatatgattactcatactttagct 20424  T
Q  164 agggcggcatgttcttgggctaatcatcgtattttttattctt 206  Q
    |||||  | ||||||||||||| ||||||||||||||||||||    
T  20425 agggcaacctgttcttgggctagtcatcgtattttttattctt 20467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 44277 - 44121
Alignment:
Q  51 attcataattctatgttattgtttctaatattatttatcagttatgtttacattaca---acttcaaggtgaagtttgttaggagacaagcgaacatggt 147  Q
    ||||| |||| |||| ||||||||||| |||||| | |||||||| |||||||| ||   ||||  |||||||||||||||||||| |||||||||||||    
T  44277 attcagaattttatgctattgtttctagtattatatttcagttatctttacattccaccaactttgaggtgaagtttgttaggagagaagcgaacatggt 44178  T
Q  148 tgctcatagtttagctagggcggcatgttcttgggctaatcatcgtattttttattc 204  Q
    ||||||||| |||||||||||||  ||||||||||||| |||  |||||||| ||||    
T  44177 tgctcatagcttagctagggcggtctgttcttgggctagtcactgtatttttgattc 44121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 13321 - 13407
Alignment:
Q  97 tttacattacaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagggcggcatgttcttgggcta 185  Q
    |||||||  ||||||  |||| |||||||||||  ||||||||||||||| ||||||   ||  ||||||||||| |||||||||||||    
T  13321 tttacatcccaactttgaggtaaagtttgttagacgacaagcgaacatggctgctcactctt--gctagggcggcctgttcttgggcta 13407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University