View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10123_low_1 (Length: 736)

Name: NF10123_low_1
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10123_low_1
NF10123_low_1
[»] scaffold0141 (1 HSPs)
scaffold0141 (13-243)||(6099-6329)
[»] chr1 (3 HSPs)
chr1 (309-597)||(44285603-44285890)
chr1 (309-594)||(44070126-44070410)
chr1 (94-263)||(49237921-49238090)
[»] chr3 (1 HSPs)
chr3 (499-594)||(16443749-16443843)


Alignment Details
Target: scaffold0141 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 6099 - 6329
Alignment:
Q  13 atgaaagaagaagggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgtgggcagcagagattagatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6099 atgaaagaagaagggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgtgggcagcagagattagatt 6198  T
Q  113 cttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtcca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6199 cttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtcca 6298  T
Q  213 ataaagagacagatcagcatccatagaatct 243  Q
    |||||||||||||||||||||||||||||||    
T  6299 ataaagagacagatcagcatccatagaatct 6329  T

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Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 309 - 597
Target Start/End: Original strand, 44285603 - 44285890
Alignment:
Q  309 ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct 408  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || || ||||||||||||    
T  44285603 ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct 44285702  T
Q  409 agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg 508  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  44285703 agttcttctcccaatctcggactcgaccttttagccgattcgcacctttactctctgtctcaatcaattcggtcagatcaatagagaagtcaggcactcg 44285802  T
Q  509 atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagcttct 597  Q
    || ||||||||||||| ||||| |||||||||  |||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  44285803 attgacttaaaggaagattccg-ccgtaaattgattgatcaatgttaccgggaagcagcaacagagatggattgagtactaaagcttct 44285890  T

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Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 309 - 594
Target Start/End: Complemental strand, 44070410 - 44070126
Alignment:
Q  309 ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct 408  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |   ||||||||||| || ||||||||||||    
T  44070410 ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct 44070311  T
Q  409 agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg 508  Q
    ||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  44070310 agttcttctcccaatctcggactcagccgtttagccggtttgcacctttactctctgtctcaatctagccggtcagatcaatagagaagtcaggcacttg 44070211  T
Q  509 atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagct 594  Q
    || ||||||||||||||||||| |||| ||||  |||||  ||||| || ||||||||||||||||||||||||||| ||||||||    
T  44070210 attgacttaaaggaaggttccg-ccgttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagct 44070126  T

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Target: chr1; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 94 - 263
Target Start/End: Complemental strand, 49238090 - 49237921
Alignment:
Q  94 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcgg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  49238090 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcgg 49237991  T
Q  194 agagccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg 263  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  49237990 agagccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg 49237921  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 499 - 594
Target Start/End: Complemental strand, 16443843 - 16443749
Alignment:
Q  499 caggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagct 594  Q
    |||||||| ||| ||||||||||||||||||||| || ||||  |||||  ||||| || ||||||||||||||||||||||||||| ||||||||    
T  16443843 caggcacttgattgacttaaaggaaggttccgcc-gttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagct 16443749  T

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