View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10123_low_10 (Length: 328)

Name: NF10123_low_10
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10123_low_10
NF10123_low_10
[»] chr7 (1 HSPs)
chr7 (16-318)||(1375195-1375497)
[»] chr3 (6 HSPs)
chr3 (196-316)||(15242868-15242988)
chr3 (196-308)||(15203855-15203967)
chr3 (191-315)||(17782035-17782158)
chr3 (191-315)||(19090662-19090785)
chr3 (259-309)||(36639739-36639790)
chr3 (262-315)||(11578791-11578844)
[»] chr6 (8 HSPs)
chr6 (190-309)||(22607792-22607911)
chr6 (196-308)||(3754441-3754552)
chr6 (198-315)||(10345426-10345543)
chr6 (220-308)||(6109419-6109507)
chr6 (196-283)||(31344214-31344301)
chr6 (246-316)||(7099225-7099295)
chr6 (215-317)||(14480094-14480195)
chr6 (220-309)||(7412455-7412544)
[»] chr2 (5 HSPs)
chr2 (198-316)||(23150797-23150915)
chr2 (198-316)||(23562054-23562172)
chr2 (228-316)||(5356615-5356704)
chr2 (204-309)||(25880932-25881037)
chr2 (190-309)||(10886760-10886880)
[»] chr5 (5 HSPs)
chr5 (198-274)||(31393138-31393214)
chr5 (108-188)||(15135112-15135199)
chr5 (262-309)||(23167001-23167048)
chr5 (190-316)||(28421468-28421593)
chr5 (196-316)||(31022361-31022482)
[»] chr4 (3 HSPs)
chr4 (200-316)||(14331932-14332048)
chr4 (215-308)||(13033591-13033684)
chr4 (228-318)||(34845454-34845544)
[»] chr8 (5 HSPs)
chr8 (276-316)||(1565440-1565480)
chr8 (190-267)||(31178408-31178485)
chr8 (190-267)||(31178920-31178997)
chr8 (190-267)||(31179432-31179509)
chr8 (190-309)||(37296504-37296622)
[»] chr1 (1 HSPs)
chr1 (196-315)||(14746682-14746801)
[»] scaffold0213 (1 HSPs)
scaffold0213 (280-325)||(25919-25964)
[»] scaffold0233 (1 HSPs)
scaffold0233 (215-314)||(15993-16093)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 1375195 - 1375497
Alignment:
Q  16 aaagagaggacctgttgagaataatatgtatatatccttagaagattataaatgtaaatttaaatatatttaaaataagatatcattaagatataactaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375195 aaagagaggacctgttgagaataatatgtatatatccttagaagattataaatgtaaatttaaatatatttaaaataagatatcattaagatataactaa 1375294  T
Q  116 tcattattggttgtattacattacatcctttaacagcagcgctagcattggatattgatccaagtacaatgtgagtgttggcagagccgttgtaagaccc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1375295 tcattattggttgtattacattacatcctttaacagcagcgctagcattggatattgatccaagtacaatgtgagtgttagcagagccgttgtaagaccc 1375394  T
Q  216 acgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtct 315  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  1375395 acgcgtgtccggcggttacgaaattataggaagtgtaatcgtcggggagagattcgcggaaacatgggaaagagacgttacagttcgtttgaaccggtct 1375494  T
Q  316 ctg 318  Q
    |||    
T  1375495 ctg 1375497  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 15242988 - 15242868
Alignment:
Q  196 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 295  Q
    ||||||||||| |||| | |||| ||||||||||||||||||||||   ||||| ||| |||||| |||| ||||  || ||||||||||||||| ||||    
T  15242988 gcagagccgttttaaggcacacgtgtgtccggcggttacgaaattagtagaagtgtaaccgtcggtgagatattcgtgggaacgtgggaaagagatgtta 15242889  T
Q  296 cagttcgtttgaaccggtctc 316  Q
    | |||||||||||| ||||||    
T  15242888 ctgttcgtttgaacaggtctc 15242868  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 15203967 - 15203855
Alignment:
Q  196 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 295  Q
    ||||||||||| |||| | |||| |||||||| ||||||||||| |   ||||| ||| |||||| |||| ||||  || ||||||||||||||| ||||    
T  15203967 gcagagccgttttaaggcacacgtgtgtccggtggttacgaaatcagtagaagtgtaaccgtcggtgagatattcgtgggaacgtgggaaagagatgtta 15203868  T
Q  296 cagttcgtttgaa 308  Q
    | |||||||||||    
T  15203867 ctgttcgtttgaa 15203855  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 17782158 - 17782035
Alignment:
Q  191 tgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagaga 290  Q
    |||| |||||||| ||||| | | |||| |||||||| ||||||||||| ||   |||| |||  |   ||||||||||| ||| | |||||||||||||    
T  17782158 tgtttgcagagccattgtatggcacacgtgtgtccggtggttacgaaatcatgacaagtgtaacagctagggagagattcgcggga-cgtgggaaagaga 17782060  T
Q  291 cgttacagttcgtttgaaccggtct 315  Q
    ||||||| ||||||||||| |||||    
T  17782059 cgttacaattcgtttgaactggtct 17782035  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 19090785 - 19090662
Alignment:
Q  191 tgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagaga 290  Q
    |||| |||||||| ||||| | | |||| |||||||| ||||||||||| ||   |||| |||  |   ||||||||||| ||| | |||||||||||||    
T  19090785 tgtttgcagagccattgtatggcacacgtgtgtccggtggttacgaaatcatgacaagtgtaacagctagggagagattcgcggga-cgtgggaaagaga 19090687  T
Q  291 cgttacagttcgtttgaaccggtct 315  Q
    ||||||| ||||||||||| |||||    
T  19090686 cgttacaattcgtttgaactggtct 19090662  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 36639739 - 36639790
Alignment:
Q  259 ggggagagattcacggaaacgtgggaaa-gagacgttacagttcgtttgaac 309  Q
    ||||||| |||| ||||||||||||||| |||||||||| ||||||||||||    
T  36639739 ggggagatattcgcggaaacgtgggaaaagagacgttacggttcgtttgaac 36639790  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 11578844 - 11578791
Alignment:
Q  262 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtct 315  Q
    ||||||||| ||| ||||||||||||| || || |||||||||||||| |||||    
T  11578844 gagagattcgcgggaacgtgggaaagaaacattgcagttcgtttgaactggtct 11578791  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 22607792 - 22607911
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 289  Q
    ||||| |||||||||||||||| | ||   |||  || ||||||| ||||  | |||||| |||||| ||||||||||||| ||| ||||| ||||||||    
T  22607792 gtgtttgcagagccgttgtaaggcacaaatgtgctcgacggttacaaaatcgtgggaagtgtaatcgccggggagagattcgcgggaacgttggaaagag 22607891  T
Q  290 acgttacagttcgtttgaac 309  Q
    ||||||||||||||||||||    
T  22607892 acgttacagttcgtttgaac 22607911  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 3754441 - 3754552
Alignment:
Q  196 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 295  Q
    |||||||| ||||||||| |||| |||  | ||||||||||| || |||||||| ||| || || |||||||||| ||| ||||| ||  |||||| |||    
T  3754441 gcagagccattgtaagacacacgtgtgctctgcggttacgaatttgtaggaagtgtaaccgccgaggagagattcgcgggaacgtagg-cagagacatta 3754539  T
Q  296 cagttcgtttgaa 308  Q
    |||||||||||||    
T  3754540 cagttcgtttgaa 3754552  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 10345426 - 10345543
Alignment:
Q  198 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 297  Q
    |||||||||||||| | |||| ||| | | || ||| |||||| | | |||||||| || ||||||||||||   || ||| |||||||||||| |||||    
T  10345426 agagccgttgtaagtcacacgtgtgcctgacgattaggaaattgtggaaagtttaaccgccggggagagattggggggaacatgggaaagagacattaca 10345525  T
Q  298 gttcgtttgaaccggtct 315  Q
     ||||||||||| |||||    
T  10345526 attcgtttgaactggtct 10345543  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 6109507 - 6109419
Alignment:
Q  220 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaa 308  Q
    ||||| ||||||||||||||  | | |||| |||  ||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||    
T  6109507 gtgtctggcggttacgaaatcgtggaaagtgtaactgtcggcgagagattcgcgagaacgtggaaaagagatgttacagttcgtttgaa 6109419  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 31344301 - 31344214
Alignment:
Q  196 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg 283  Q
    |||||||||||||||| | |||| ||| ||| ||||||||||||  || ||||| ||| || ||| |||| |||||||| ||||||||    
T  31344301 gcagagccgttgtaaggcacacgtgtgaccgacggttacgaaatcgtaagaagtgtaaccgccggtgagatattcacgggaacgtggg 31344214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 7099295 - 7099225
Alignment:
Q  246 aagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctc 316  Q
    |||| ||| |||||| |||| |||| ||  ||||||||||||||||||||  |||||||||||| ||||||    
T  7099295 aagtgtaaccgtcggtgagatattcgcgagaacgtgggaaagagacgttattgttcgtttgaacaggtctc 7099225  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 14480094 - 14480195
Alignment:
Q  215 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtc 314  Q
    |||| ||||||||| ||||||||||  | | || | ||| |||||| |||| | |||||| |||||||||| ||| |||| |||||||||||||| ||||    
T  14480094 cacgtgtgtccggcagttacgaaatcgtggaaaatgtaaccgtcggagagaaactcacgggaacgtgggaa-gaggcgttgcagttcgtttgaactggtc 14480192  T
Q  315 tct 317  Q
    |||    
T  14480193 tct 14480195  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 7412455 - 7412544
Alignment:
Q  220 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaac 309  Q
    ||||||| ||||||||||||  || ||||| ||| || ||| |||| |||| ||| ||| ||||||| |||||||||  |||||||||||    
T  7412455 gtgtccgccggttacgaaatcgtaagaagtgtaaccgccggtgagatattcgcgggaacttgggaaatagacgttactattcgtttgaac 7412544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 23150797 - 23150915
Alignment:
Q  198 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 297  Q
    |||||||||||| | | |||| ||||||| ||||||||||||  | ||||||  || |  | | ||||||||||||| ||||||||||||||||||||||    
T  23150797 agagccgttgtatggcacacgtgtgtccgacggttacgaaatcgtgggaagtgaaacctccagtgagagattcacgggaacgtgggaaagagacgttaca 23150896  T
Q  298 gttcgtttgaaccggtctc 316  Q
     || |||||||| ||||||    
T  23150897 tttagtttgaacgggtctc 23150915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 23562054 - 23562172
Alignment:
Q  198 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 297  Q
    |||||||||||| | | |||| ||||||| ||||||||||||  | ||||||  || |  | | ||||||||||||| ||||||||||||||||||||||    
T  23562054 agagccgttgtatggcacacgtgtgtccgacggttacgaaatcgtgggaagtgaaacctccagtgagagattcacgggaacgtgggaaagagacgttaca 23562153  T
Q  298 gttcgtttgaaccggtctc 316  Q
     || |||||||| ||||||    
T  23562154 tttagtttgaacgggtctc 23562172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 5356615 - 5356704
Alignment:
Q  228 cggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgttacagttcgtttgaaccggtctc 316  Q
    ||||||||||||  | || ||| ||| |||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||| ||||||    
T  5356615 cggttacgaaatcgtgggtagtgtaaccgtcggggagagattcgcgggatcatgggtaaagagacgttgcagttcgtttgaactggtctc 5356704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 25881037 - 25880932
Alignment:
Q  204 gttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgt 303  Q
    |||||||| | |||| |||||||||||| || |||| |   ||||| ||| || | | |||| |||| ||| ||||||||||||||||||||| ||||||    
T  25881037 gttgtaaggcacacgtgtgtccggcggtcacaaaatcagtagaagtgtaaccgccagtgagatattcgcgggaacgtgggaaagagacgttactgttcgt 25880938  T
Q  304 ttgaac 309  Q
    ||||||    
T  25880937 ttgaac 25880932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 10886880 - 10886760
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgt-gggaaaga 288  Q
    ||||| |||||||||||| ||| | || | ||| ||| || |||||||||  | |||||| |||  ||||||||||||||| ||  ||||| ||||||||    
T  10886880 gtgtttgcagagccgttgaaaggcacatgtgtgcccgacgattacgaaatcgtgggaagtgtaacagtcggggagagattcgcgagaacgtggggaaaga 10886781  T
Q  289 gacgttacagttcgtttgaac 309  Q
    ||  |||||||||||||||||    
T  10886780 gattttacagttcgtttgaac 10886760  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 31393138 - 31393214
Alignment:
Q  198 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacgg 274  Q
    |||||||||||||| | |||||||| || ||||||||||||| || |||||| ||| ||||||||| ||||||||||    
T  31393138 agagccgttgtaaggcacacgcgtgccctgcggttacgaaatcatgggaagtgtaaccgtcggggaaagattcacgg 31393214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 15135112 - 15135199
Alignment:
Q  108 ataactaatcattattggttgtattacattacatcctttaacagcagc-------gctagcattggatattgatccaagtacaatgtg 188  Q
    |||| |||| |||||||| ||| ||||||||||||||| |||||||||       ||||||||||||| |||||||||||||||||||    
T  15135112 ataattaataattattggctgttttacattacatccttaaacagcagcagcagaagctagcattggatgttgatccaagtacaatgtg 15135199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 23167001 - 23167048
Alignment:
Q  262 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaac 309  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  23167001 gagatattcgcgggaacgtgggaaagagacgttacagttcgtttgaac 23167048  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 316
Target Start/End: Complemental strand, 28421593 - 28421468
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 289  Q
    ||||| ||| ||||| |||||| | |||| |||  ||||||||||||| || |||||||| ||| |  || |||||||||   || |||||||| | |||    
T  28421593 gtgtttgcatagccgctgtaaggcacacgtgtgctcggcggttacgaatttgtaggaagtgtaaccaccgaggagagatttgtgggaacgtgggca-gag 28421495  T
Q  290 acgttacagttcgtttgaaccggtctc 316  Q
    |||||||||||||||||||| ||||||    
T  28421494 acgttacagttcgtttgaactggtctc 28421468  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 31022482 - 31022361
Alignment:
Q  196 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgtt 294  Q
    |||||| ||||||||| | |||| ||| | |||||||||||||| |   ||||| ||| |||||| || | |||  ||| |||||||| ||||| |||||    
T  31022482 gcagagtcgttgtaaggcacacgtgtggctggcggttacgaaatcactagaagtataaccgtcggtgatatatttgcgggaacgtgggtaaagacacgtt 31022383  T
Q  295 acagttcgtttgaaccggtctc 316  Q
    || |||||||||||| ||||||    
T  31022382 actgttcgtttgaacaggtctc 31022361  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 14332048 - 14331932
Alignment:
Q  200 agccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagt 299  Q
    |||| ||||| ||| ||||  |||||||||||||||||||  | ||| || ||| ||  || ||||||| ||| ||||| ||||||||||||||||||||    
T  14332048 agcctttgtacgacacacgtatgtccggcggttacgaaatcgtgggatgtataaccgctggtgagagatacacagaaacatgggaaagagacgttacagt 14331949  T
Q  300 tcgtttgaaccggtctc 316  Q
    ||||| |||| ||||||    
T  14331948 tcgttcgaactggtctc 14331932  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 13033684 - 13033591
Alignment:
Q  215 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaa 308  Q
    |||| ||||||||||||||||||||    |||||| ||| |||| | |||| |||| ||| |||||| |||| ||||||||| |||||||||||    
T  13033684 cacgtgtgtccggcggttacgaaatcgggggaagtgtaaccgtcagtgagatattcgcgggaacgtgagaaatagacgttactgttcgtttgaa 13033591  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 34845544 - 34845454
Alignment:
Q  228 cggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctg 318  Q
    ||||||||||||  | |||||| ||| || ||| |||| |||  ||| || ||||||||||||||||| ||||| ||||||| ||||||||    
T  34845544 cggttacgaaatcgtgggaagtgtaaccgccggtgagatatttgcgggaatgtgggaaagagacgttaaagttcatttgaactggtctctg 34845454  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 1565480 - 1565440
Alignment:
Q  276 aacgtgggaaagagacgttacagttcgtttgaaccggtctc 316  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  1565480 aacgtgggaaagagacgttacagttcgtttgaactggtctc 1565440  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 31178408 - 31178485
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 267  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31178408 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31178485  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 31178920 - 31178997
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 267  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31178920 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31178997  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 31179432 - 31179509
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 267  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31179432 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31179509  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 37296622 - 37296504
Alignment:
Q  190 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 289  Q
    ||||| |||||||||||||||| | || | |||  ||||||||| ||| |  |||||||| ||| ||||| ||||||||||  || || |||||  ||||    
T  37296622 gtgtttgcagagccgttgtaaggcacatgtgtgctcggcggttatgaattcgtaggaagtgtaaccgtcgaggagagattcgagggaatgtggg-cagag 37296524  T
Q  290 acgttacagttcgtttgaac 309  Q
    |||||||| |||||||||||    
T  37296523 acgttacaattcgtttgaac 37296504  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 14746801 - 14746682
Alignment:
Q  196 gcagagccgttgtaa-gacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtt 294  Q
    ||||||||||||||| ||| |||| ||||||| ||||||| |||| | || |||| ||| |  |||  ||| ||||| || ||||||| |||||||||||    
T  14746801 gcagagccgttgtaatgacacacgtgtgtccgacggttacaaaatcagagaaagtgtaaccaccggtaagatattcatgggaacgtgg-aaagagacgtt 14746703  T
Q  295 acagttcgtttgaaccggtct 315  Q
    ||||||||||||||| |||||    
T  14746702 acagttcgtttgaactggtct 14746682  T

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Target: scaffold0213 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 25919 - 25964
Alignment:
Q  280 tgggaaagagacgttacagttcgtttgaaccggtctctgctcctcc 325  Q
    |||||||||||||||| ||||||||| ||| |||||||| ||||||    
T  25919 tgggaaagagacgttaaagttcgtttcaactggtctctgttcctcc 25964  T

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Target: scaffold0233 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 314
Target Start/End: Complemental strand, 16093 - 15993
Alignment:
Q  215 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgttacagttcgtttgaaccggt 313  Q
    |||| |||| |||||||||||||||  | |||||| ||| || ||| |||| ||||  || |||||||  ||||| |||||||||||||||||||| |||    
T  16093 cacgtgtgttcggcggttacgaaatcgtgggaagtgtaaccgccggtgagatattcgtgggaacgtggataaagatacgttacagttcgtttgaactggt 15994  T
Q  314 c 314  Q
    |    
T  15993 c 15993  T

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