View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_12 (Length: 296)
Name: NF10123_low_12
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 12290281 - 12289984
Alignment:
| Q |
1 |
aaactgtttgcaaaataacattgtattaatgaaaaagtataacttttttataaggagaaaataatgaaacttggtaattttataagaatcaaaaaagtat |
100 |
Q |
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| T |
12290281 |
aaacagtttgcaaaataacattttatgaacgaaaaagtataacttttttataaggacaaaataatgaaacttggtaattttataagaatcaaaaaagtat |
12290182 |
T |
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| Q |
101 |
tttacccaatatattattggatttaatatgtttcatcatgcctacaaaattacaaactttcattttcatccttataataaaattggcacatatgtgttcc |
200 |
Q |
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| T |
12290181 |
tttatccaatatattattggatttcatatgtttcatcatgcctacaaaattacaaactttcattttcatccttataataaaattggcacttatgtgttcc |
12290082 |
T |
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| Q |
201 |
taaaatatgttcatcttaaattcaaatttaattaattatattcgt-annnnnnnnaacacctaaa-gttcaagataaaagtagtgaaaatatgaactt |
296 |
Q |
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| T |
12290081 |
taaaatatgttcatcttaaattcaaatttaattaattatattcgtaattttttttaacacctaaaggttcaagataaaagtagtgaaaatatgtactt |
12289984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 27914439 - 27914659
Alignment:
| Q |
15 |
ataacattgtattaatgaaaaagtataacttttttataaggagaaaataatgaaacttggtaattttataagaatcaaaaaagtattttacccaatatat |
114 |
Q |
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| T |
27914439 |
ataacattgtatgaatgaaaaagtatgacggttttaggaggacaaaataatgaaacttggtaattatatagggactaaaaaagaattttacccaatatat |
27914538 |
T |
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| Q |
115 |
tattggatttaatatgtttcatcatgcctacaaaattacaaactttcattttcatccttataataaaattggcacatatgtgttcctaaaatatgttcat |
214 |
Q |
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| T |
27914539 |
t-ttagatttaatgtgttttttcaaatctataaaattacaaactctcattttcatccttataataaatttggcactttcggattcctataatattttcat |
27914637 |
T |
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| Q |
215 |
cttaaattcaaatttaattaat |
236 |
Q |
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| T |
27914638 |
cttaaattcaaaattagttaat |
27914659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 27915362 - 27915397
Alignment:
| Q |
255 |
aacacctaaagttcaagataaaagtagtgaaaatat |
290 |
Q |
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| T |
27915362 |
aacacctaaagttcaaaataaaagtagtgaaaatat |
27915397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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