View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_15 (Length: 250)
Name: NF10123_low_15
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_15 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4907949 - 4907713
Alignment:
| Q |
1 |
cctttgccattggctgtgtggcagatttgactgattttccaggaggaagcctaggaattggagtgaatgaagggttcttaggaggaatttgaagtacttc |
100 |
Q |
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| T |
4907949 |
cctttaccattggctgtgtggcagatttgactgattttccaggaggaagcctaggaattggagtgaatgaagggttcttaggaggaatttgaagtacttc |
4907850 |
T |
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| Q |
101 |
agatccattattacctttacatcttccaggtatatgctcccaattgaaaggcactgcaacaggttccgttacttgatccaatgtcatttctgatttgtaa |
200 |
Q |
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| T |
4907849 |
agatccattattacctttacattttccaggtatatgctcccaattgaaaggcactgcaacaggttccgttacttgatccaatgtcatttctgatttgtaa |
4907750 |
T |
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| Q |
201 |
cttgcaagagtgtggcgtttctctaatatcttcctct |
237 |
Q |
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| T |
4907749 |
cttgcaagagtgtggcgtttctctaatatcttcctct |
4907713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 79393 - 79489
Alignment:
| Q |
131 |
tatatgctcccaattgaaaggcactgcaacaggttccgttacttgatccaatgtcatttctga-tttgtaacttgcaagagtgtggcgtttctctaa |
226 |
Q |
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| T |
79393 |
tatatgctcccaattcaaaggcactgtaacaggttctgttacttgattcaatttcatttctgattttctaacttacaaaagtatggcgtttctctaa |
79489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 48809 - 48870
Alignment:
| Q |
169 |
ttacttgatccaatgtcatttctgatttgtaacttgcaagagtgtggcgtttctctaatatc |
230 |
Q |
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| T |
48809 |
ttacttgatcagatttcatttctgatttctaacttgcaagagtgtgacgtttttcaaatatc |
48870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 38604 - 38644
Alignment:
| Q |
142 |
aattgaaaggcactgcaacaggttccgttacttgatccaat |
182 |
Q |
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| T |
38604 |
aattgaaaggcactgcaacatgttctgttacttaatccaat |
38644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 31070632 - 31070688
Alignment:
| Q |
159 |
acaggttccgttacttgatccaatgtcatttctgatttgtaacttgcaagagtgtgg |
215 |
Q |
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| T |
31070632 |
acaggttgtgttacttggtccaatgtcatttctgatttgtaccttacaagagtgtgg |
31070688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 33710031 - 33709977
Alignment:
| Q |
112 |
tacctttacatcttccaggtatatgctcccaattgaaaggcactgcaacaggttc |
166 |
Q |
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| T |
33710031 |
tacctttgcatctttgaggtacatgctcccaattgaagggcactgcaacatgttc |
33709977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 21177697 - 21177661
Alignment:
| Q |
181 |
atgtcatttctgatttgtaacttgcaagagtgtggcg |
217 |
Q |
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| T |
21177697 |
atgtcatctctgatttctaacttgcaagagtgtggcg |
21177661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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