View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_2 (Length: 621)
Name: NF10123_low_2
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Complemental strand, 6819328 - 6818730
Alignment:
| Q |
14 |
aggcccaaaataaagcatatctaaaatagttcaatttannnnnnnattaaagtgtgaagatttcattagtataaagtgaactcaagtcattttcaataag |
113 |
Q |
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| T |
6819328 |
aggcccaaaataaagcatatctaaaatagttcaatttatttttttattaaagtgtgaagatttcattagtataaagtgaactcaagtcattttcaataag |
6819229 |
T |
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| Q |
114 |
gatcattaaacatgtttgaatttaatcctatctaacttaaaagtcatataaagaatgatttgtaattggtcgacaatgtgaaaagttttatatcaaaggt |
213 |
Q |
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| T |
6819228 |
gatcattaaacatgtttgaatttaatcctatctaacttaaaagtcatataaagaatgatttgtaattggtcgacaatgtgaaaagttttatatcaaaggt |
6819129 |
T |
|
| Q |
214 |
gcatnnnnnnnttcaagattaagctcgtccagtaattcacattaacaattgagataattc--atgccttaacattttcctagtaagtgatgataacaggt |
311 |
Q |
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| T |
6819128 |
gcataaaaaa-ttcaagattaagctcgtccagtaattcacattaacaagtgagataattctcatgccttaacattttcctagtaagtgatgataacaggt |
6819030 |
T |
|
| Q |
312 |
gtttgtgtc---agtgtcaggttcgtttgttgatgaggacaaggaagaaatatatgaccatattaacgaagcacacactcagacttctcatcactatcca |
408 |
Q |
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| T |
6819029 |
gtttgtgtcgtcaatgtcaggttcaatagttgatgaggacaaggaagaaagatatgaccatattaacgaagcatacactcagacttctcgtcactatcca |
6818930 |
T |
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| Q |
409 |
ttgaactatggaacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtatgtcaatcttgtttcatttaattattacttggttga |
508 |
Q |
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| T |
6818929 |
ttgaactatggaacatgcatgaccttcttatctttgttgaataggttttttaaagtaacaagtatgtcaatcttctttcatttaattattacttggttga |
6818830 |
T |
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| Q |
509 |
nnnnnnnnatcaccttatagttatagccagtata-ttacaagcctaacttgtatattattgttctattatattgcagcaacacgaaaagatacaaatgct |
607 |
Q |
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| T |
6818829 |
tttttttt-tcaccttatagttatagccagtatatttacaagcctaacttgtatattattgttctattatattacagcaacacgaaaagatacaaatgct |
6818731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 308 - 496
Target Start/End: Complemental strand, 6810832 - 6810644
Alignment:
| Q |
308 |
aggtgtttgtgtcagtgtcaggttcgtttgttgatgaggacaaggaagaaatatatgaccatattaacgaagcacacactcagacttctcatcactatcc |
407 |
Q |
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| T |
6810832 |
aggtgcttctgtcagtgtcaggttcgtttgttgatgacgacaaggaagaaagatatgaccatattaacgaagcatacactcagacttctcgtcactatcc |
6810733 |
T |
|
| Q |
408 |
attgaactatggaacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtatgtcaatcttgtttcatttaatta |
496 |
Q |
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| T |
6810732 |
attgaactatggaacatgcatgaccttcttatctttgttgaatagtggctttaaagtaacaagtatgtcaatcttgtttcatttaatta |
6810644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 301 - 508
Target Start/End: Complemental strand, 6833590 - 6833389
Alignment:
| Q |
301 |
tgataacaggtgtttgtgtcagtgtcaggttcgtttgttgatgaggacaaggaagaaatatatgaccatattaacgaagcacacactcagacttctcatc |
400 |
Q |
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| T |
6833590 |
tgataaaaggtgtttgtgccaatgtcaggttcaattgttgatgaggacaaggaagaaagatatgac---attca---agcacacacacagacctctcatc |
6833497 |
T |
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| Q |
401 |
actatccattgaactatggaacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtatgtcaatcttgtttcatttaattattac |
500 |
Q |
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| T |
6833496 |
actatccactgaactatggaacatgcatgaccttcatatctttgttgaataggttttttaaagtaacaagtatgtcaatcttctttcatttaattattac |
6833397 |
T |
|
| Q |
501 |
ttggttga |
508 |
Q |
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| T |
6833396 |
tcggttga |
6833389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 608
Target Start/End: Complemental strand, 6833350 - 6833303
Alignment:
| Q |
561 |
tattattgttctattatattgcagcaacacgaaaagatacaaatgctg |
608 |
Q |
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| T |
6833350 |
tattatttttctattatattacagcaacaggaaaagatacaaaagctg |
6833303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 26494009 - 26493941
Alignment:
| Q |
115 |
atcattaaacatgtttgaatttaatcctatctaacttaaaagtcatataaagaatgatttgtaattggt |
183 |
Q |
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| T |
26494009 |
atcattaaaaatatttgactttaatcatgtctacgttaaaagtcatataaacaatgaattgcaattggt |
26493941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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