View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_23 (Length: 220)
Name: NF10123_low_23
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_23 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8772661 - 8772442
Alignment:
| Q |
1 |
tgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttgtttctactctgctcaa |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8772661 |
tgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttgtttctactctgctcaa |
8772562 |
T |
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| Q |
101 |
actgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaagttctctctgtttttg |
200 |
Q |
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||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8772561 |
actagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagctaatttaagactcaattgggaaagttctctctgtttttg |
8772462 |
T |
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| Q |
201 |
aacaagaagttctctgatat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
8772461 |
aacaagaagttctctgatat |
8772442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19721770 - 19721989
Alignment:
| Q |
1 |
tgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttgtttctactctgctcaa |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19721770 |
tgaatcatcaacttcctgtgttgggctcttggcataaatcatgaatgttgctggttatggacaacaacaatcatcgcagtcttgtttctactctgctcaa |
19721869 |
T |
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| Q |
101 |
actgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaagttctctctgtttttg |
200 |
Q |
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| T |
19721870 |
tttgattgaagctggctgctgatatatttattttcctattgtcttataatttttggctagctaatttaagactcaataggaaaagttctctctgtttttg |
19721969 |
T |
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| Q |
201 |
aacaagaagttctctgatat |
220 |
Q |
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| T |
19721970 |
aacaagaagttctctgatat |
19721989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 35808065 - 35808013
Alignment:
| Q |
97 |
tcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataa |
149 |
Q |
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| T |
35808065 |
tcaaactgattgaagttggcagctgatatatttagtttcctattgtcttataa |
35808013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 7558043 - 7558238
Alignment:
| Q |
1 |
tgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttgtttctactctgctcaa |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7558043 |
tgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttgtttctactctgctcaa |
7558142 |
T |
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| Q |
101 |
actgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaagttctctctgtt |
196 |
Q |
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||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7558143 |
actagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagctaatttaagactcaattgggaaagttctctctgtt |
7558238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 22756615 - 22756559
Alignment:
| Q |
164 |
atttaagactcaatagggaaagttctctctgtttttgaacaagaagttctctgatat |
220 |
Q |
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||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
22756615 |
atttacgactcgatagagaaagttctctctttttttgaacaagaagttctctgatat |
22756559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 22730078 - 22730133
Alignment:
| Q |
164 |
atttaagactcaatagggaaagttctctctgtttttgaacaagaagttctctgatat |
220 |
Q |
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||||| ||||| |||| ||||||||||||| |||||| |||||||||||||| |||| |
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| T |
22730078 |
atttacgactcgatagagaaagttctctctttttttg-acaagaagttctctaatat |
22730133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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