View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10123_low_3 (Length: 421)
Name: NF10123_low_3
Description: NF10123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10123_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 142 - 411
Target Start/End: Complemental strand, 9927467 - 9927198
Alignment:
| Q |
142 |
attagaacacatcgtattcattagcatattaaatttcaagatgatgtcgttaagtatatgattactcaccacgtaaaattcttctttgcagatgcattta |
241 |
Q |
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| T |
9927467 |
attagaacacatcgtattcattagcatattaaatttcaagatgatgtcgttaagtatatgattactgaccacgtaaaattcttctttgcagatgcattta |
9927368 |
T |
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| Q |
242 |
gattatatgacttgaggcatactggttacattgagcgcgaagaggtaaatactcctgtggtcttctataggatatatttgtatgattcttatgacaattg |
341 |
Q |
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| T |
9927367 |
gattatatgacttgaggcatactggttacattgagcgcgaagaggtaaatactcctgtggtcttctataggatatatttgtatgattcttatgacaattg |
9927268 |
T |
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| Q |
342 |
tgatatgaaaatttacagttgaaggagatggtattgatgattttggttgaatctgatttggttctctctg |
411 |
Q |
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| T |
9927267 |
tgatatgaaaatttacagttgaaggagatggtattgatgattttggttgaatctgatttggttctctctg |
9927198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9927720 - 9927667
Alignment:
| Q |
1 |
tcatcctaaagctcctcgagcagacaaaataaaatgtaagaaatataagtcatt |
54 |
Q |
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| T |
9927720 |
tcatcctaaagctcctcgagcagacaaaataaaatgtaagaaatataagtcatt |
9927667 |
T |
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